View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18091_high_3 (Length: 232)
Name: NF18091_high_3
Description: NF18091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18091_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 52912629 - 52912698
Alignment:
| Q |
137 |
ctgcagcgaccaatcatttgtctaat----tgttttcaaacaagaacaaaaacatcaccttctcttctct |
202 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52912629 |
ctgcaacgaccaatcatttgtctaattaattgttttcaaacaagaacaaaaacatcaccttctcttctct |
52912698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 52912541 - 52912584
Alignment:
| Q |
9 |
acatcatcacaacttggaaattgctttagtttttaaaacttaaa |
52 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52912541 |
acatcatcacaacctggaaattgctttagtttttaaaacttaaa |
52912584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University