View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18091_low_1 (Length: 256)

Name: NF18091_low_1
Description: NF18091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18091_low_1
NF18091_low_1
[»] chr1 (2 HSPs)
chr1 (9-255)||(8072853-8073099)
chr1 (45-178)||(8069323-8069454)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 8073099 - 8072853
Alignment:
Q  9 tcaaatatctttacaaaacttccttttcagtacatttgaatttctaaaagagagaggaaactaagaaggaaataaaatatacatcaaattaaatattgtt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8073099 tcaaatatctttacaaaacttccttttcagtacatttgaatttctaaaagagagaggaaactaagaaggaaataaaatatacatcaaattaaatattgtt 8073000  T
Q  109 tgctattgtttccaaaaggtttcttgagcctgaaaatttgaagccttgtcttcctagcttgagctgctgccaaaactctatttgttgtagtttcatcgaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8072999 tgctattgtttccaaaaggtttcttgagcctgaaaatttgaagccttgtcttcctagcttgagctgctgccaaaactctatttgttgtagtttcatcgaa 8072900  T
Q  209 ctgttgatacgaggccgcgtcgatcaactcttctgctgttgagttca 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8072899 ctgttgatacgaggccgcgtcgatcaactcttctgctgttgagttca 8072853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 8069454 - 8069323
Alignment:
Q  45 tgaatttctaaaagagagaggaaactaagaaggaaataaaatatacatcaaattaaatattgtttgctattgtttccaaaaggtttcttgagcctgaaaa 144  Q
    ||||||||||||||||||  |||||||| |||||||||||||| |||||||| | ||| |||||| || ||||||||||||||||| |||||||||||      
T  8069454 tgaatttctaaaagagag--gaaactaaaaaggaaataaaataaacatcaaaatgaatgttgtttactcttgtttccaaaaggttttttgagcctgaatt 8069357  T
Q  145 tttgaagccttgtcttcctagcttgagctgctgc 178  Q
    | ||||||||| | | ||||||||||||||||||    
T  8069356 tctgaagccttctttgcctagcttgagctgctgc 8069323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University