View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18091_low_4 (Length: 215)
Name: NF18091_low_4
Description: NF18091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18091_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 9857681 - 9857482
Alignment:
| Q |
1 |
ttcatcttcaaattcatccaaaccattgttccattgatatcctcggtaatcatcttcaaaataaacttcataatctaattcttcataagtttcactttca |
100 |
Q |
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| T |
9857681 |
ttcatcttcaaattcatccaaaccattgttccattgatatcctcggtaatcatcttcaaaataaacttcataatctaattcttcataagtttcactttca |
9857582 |
T |
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| Q |
101 |
atagcacttgtaataggaagagccaacccattatcttcctccccaacctcaatttcctcttcatcctcttccaaacaaaggttctcttcatctccgtaat |
200 |
Q |
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| T |
9857581 |
atagcacttgtaataggaagagccaacccattatcttcctccccaacctcaatttcctctttatcctcttccaaacaaaggttctcttcatctccgtaat |
9857482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9857870 - 9857797
Alignment:
| Q |
1 |
ttcatcttcaaattcatccaaaccattgttccattgatatcctcggtaatcatcttcaaaataaacttcataat |
74 |
Q |
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|||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||| |
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| T |
9857870 |
ttcatcttcatattcttccaaaccaacgttccattgatatcctccgtaatcatcttcataattaacttcataat |
9857797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 9857753 - 9857712
Alignment:
| Q |
31 |
ccattgatatcctcggtaatcatcttcaaaataaacttcata |
72 |
Q |
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| T |
9857753 |
ccattgatatcctccgtaatcatcttcacaataaacttcata |
9857712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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