View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18092_high_5 (Length: 273)

Name: NF18092_high_5
Description: NF18092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18092_high_5
NF18092_high_5
[»] chr4 (3 HSPs)
chr4 (9-145)||(23424702-23424842)
chr4 (1-145)||(39655548-39655695)
chr4 (9-63)||(39429640-39429694)
[»] chr2 (1 HSPs)
chr2 (9-145)||(20991696-20991836)
[»] chr5 (2 HSPs)
chr5 (9-145)||(9923619-9923758)
chr5 (9-145)||(1970010-1970149)
[»] chr3 (1 HSPs)
chr3 (9-145)||(43768438-43768577)
[»] chr1 (2 HSPs)
chr1 (1-145)||(50427814-50427962)
chr1 (1-60)||(14742047-14742106)
[»] chr8 (2 HSPs)
chr8 (1-145)||(7054488-7054633)
chr8 (12-63)||(42345812-42345863)
[»] chr7 (1 HSPs)
chr7 (144-183)||(32903997-32904036)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 23424842 - 23424702
Alignment:
Q  9 atgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgagaatattccagatc 104  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||| |||||||||||| |||||||||||||||||    
T  23424842 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattgtatgagaatattccagatc 23424743  T
Q  105 tggagnnnnnnnngccttatacgtaatagagcaatagaaaa 145  Q
    | |||        ||||||||||||||||||||||||||||    
T  23424742 ttgagttttttttgccttatacgtaatagagcaatagaaaa 23424702  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 39655695 - 39655548
Alignment:
Q  1 aaaaaatgatgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgagaatat 96  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    ||||||||||| |||||||||||  |||||||||    
T  39655695 aaaaaatgatgcagcaatagaaattcaactaccctttgagaatatgaataagaatgttcatgtccatgagaatattggtgaccctattgcatgagaatat 39655596  T
Q  97 tccagatctggagnnnnnnnngccttatacgtaatagagcaatagaaaa 145  Q
    ||| ||||| |||        ||||||||||||||||||||||||||||    
T  39655595 tcccgatcttgag-ttcttttgccttatacgtaatagagcaatagaaaa 39655548  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 39429640 - 39429694
Alignment:
Q  9 atgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatgt 63  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39429640 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgt 39429694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 20991696 - 20991836
Alignment:
Q  9 atgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgagaatattccagatc 104  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||| |||||||||||| |||||||||||||||||    
T  20991696 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattgtatgagaatattccagatc 20991795  T
Q  105 tggagnnnnnnnngccttatacgtaatagagcaatagaaaa 145  Q
    | |||        ||||||||||||||||||||||||||||    
T  20991796 ttgagttttttttgccttatacgtaatagagcaatagaaaa 20991836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 9923758 - 9923619
Alignment:
Q  9 atgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgagaatattccagatc 104  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||| |||||||||||| |||||||||||||||||    
T  9923758 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattgtatgagaatattccagatc 9923659  T
Q  105 tggagnnnnnnnngccttatacgtaatagagcaatagaaaa 145  Q
    | |||        ||||||||||||||||||||||||||||    
T  9923658 ttgag-tttttttgccttatacgtaatagagcaatagaaaa 9923619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 1970149 - 1970010
Alignment:
Q  9 atgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatgtg----agaatattgatgaccctattgtgtgagaatattccagatc 104  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||     ||||||||| |||||||||||| |||||||||||||||||    
T  1970149 atgcagcaatagaaattcaactatcctttgagaatatgaacaagaatgttcatgtccataagaatattggtgaccctattgtatgagaatattccagatc 1970050  T
Q  105 tggagnnnnnnnngccttatacgtaatagagcaatagaaaa 145  Q
    | |||        ||||||||||||||||||||||||||||    
T  1970049 ttgag-tttttttgccttatacgtaatagagcaatagaaaa 1970010  T

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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 43768438 - 43768577
Alignment:
Q  9 atgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgagaatattccagatc 104  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||| |||||||||||| |||||||||||||||||    
T  43768438 atgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattgtatgagaatattccagatc 43768537  T
Q  105 tggagnnnnnnnngccttatacgtaatagagcaatagaaaa 145  Q
    | |||        ||||||||||||||||||||||||||||    
T  43768538 ttgag-tttttttgccttatacgtaatagagcaatagaaaa 43768577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 50427814 - 50427962
Alignment:
Q  1 aaaaaatgatgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgagaatat 96  Q
    ||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||    ||||||||||| |||||||||||  |||||||||    
T  50427814 aaaaaatgatgcaacaatagaaattcaactaccctttgggaatatgaacaagaatgttcatgtccatgagaatattggtgaccctattgcatgagaatat 50427913  T
Q  97 tccagatctggagnnnnnnnngccttatacgtaatagagcaatagaaaa 145  Q
    ||||||||| |||        ||||| ||||||||||||||||||||||    
T  50427914 tccagatcttgagttttttttgccttctacgtaatagagcaatagaaaa 50427962  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14742106 - 14742047
Alignment:
Q  1 aaaaaatgatgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttca 60  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  14742106 aaaaaatgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttca 14742047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 7054488 - 7054633
Alignment:
Q  1 aaaaaatgatgcagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatg----tgagaatattgatgaccctattgtgtgagaatat 96  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||  |||    ||| ||||||| |||| ||||||  |||||||||    
T  7054488 aaaaaatgatgcagcaatagaaattcaactaccctttaagaatatgaacaagaatgt--atgtccatgaaaatattggtgactctattgcatgagaatat 7054585  T
Q  97 tccagatctggagnnnnnnnngccttatacgtaatagagcaatagaaaa 145  Q
    | ||||||| |||        ||||||||||||||| ||||||||||||    
T  7054586 ttcagatcttgag-ttcttttgccttatacgtaataaagcaatagaaaa 7054633  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 42345812 - 42345863
Alignment:
Q  12 cagcaatagaaattcaactaccctttgagaaaatgaacaagaatgttcatgt 63  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  42345812 cagcaatagaaattcaactatcctttgagaatatgaacaagaatgttcatgt 42345863  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 32904036 - 32903997
Alignment:
Q  144 aagttagatttgattctgatcatgatataaagataatgaa 183  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  32904036 aagttagatctgattctgatcatgatataaagataatgaa 32903997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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