View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18092_high_6 (Length: 232)
Name: NF18092_high_6
Description: NF18092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18092_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 32123330 - 32123104
Alignment:
| Q |
10 |
acatcatcatcagtgttaatttaatcctaaatattttctcaaatcc---------------aaaaaattttgctatttctacaaataatcacatcataat |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32123330 |
acatcatcatcagtgttaatttaatcctaaatattttctcaaatccttgttatccaaatccaaaaaaatttgctatttctacaaataatcacatcataat |
32123231 |
T |
|
| Q |
95 |
ctacaatttcttctcttttttacaaacaaccacgttaaccaaaacacaaacacatatgaatatcatacattgttatggtaatgataatgcgttgttacaa |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32123230 |
ctacaatttcttctcttttttacaaacaaccacgttaaccaaaacacaaacacatatgaatatcatacattgttatggtaatgataatgcgttattacaa |
32123131 |
T |
|
| Q |
195 |
tgtcgcattcaacaccatcgatgatgt |
221 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
32123130 |
tgtcgcattcaacaccatcaatgatgt |
32123104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University