View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18092_low_1 (Length: 545)
Name: NF18092_low_1
Description: NF18092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18092_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 240 - 539
Target Start/End: Complemental strand, 13413902 - 13413615
Alignment:
| Q |
240 |
tattatgcaatatacttatcaactaagataagctcacaatgacacatcactgctgtagaatttaattgatatataatagtaatactcaacgcccaattag |
339 |
Q |
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| T |
13413902 |
tattatgcaatatctttatcaactaagataagctcacaatgacacatcactactgtagaatttaattgatatataatagtaatactcaacgctcaattag |
13413803 |
T |
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| Q |
340 |
tgatgtcatccaacagttaattattgatgaatgtaaggactgtaagtttagagtaagttttggtaggggataaatcaatagtggtgcataaattaacaat |
439 |
Q |
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| T |
13413802 |
tgatattatccaacagttaattattgatgaatgtaaggactgtaagtttagagtaagttttgttaggggataaatcaatagtggtgcataaattaacaat |
13413703 |
T |
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| Q |
440 |
gggtacactttgattgagcgtattcatataggctgtctggttagaagagcaaaaatctttctttgggggtcggatgaccttaagtgccatttcttctctc |
539 |
Q |
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| T |
13413702 |
gggtacactttgattgagcgtat------------tctggttagaagagcaaaaatctttctttgggggtcggatgacctcaagtgccatttcttctctc |
13413615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 13414077 - 13413896
Alignment:
| Q |
1 |
tcgttatacttatattacattgttaaacaaagcccaat--------ataaatggataaatccggtggccaccgtggatttgtttccttttattccgggaa |
92 |
Q |
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| T |
13414077 |
tcgttatacttatattactttgttaaacaaagcccaatttcgaaaaataaatggataaatccggtggccaccgtggatttgtttccttttattccgggaa |
13413978 |
T |
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| Q |
93 |
atattcttgtcatatttatcacctaattcttttatgagtatgtaattgttgtaacttatttactatagaattgttttttatg |
174 |
Q |
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| T |
13413977 |
atattcttgtcatatttatcacctaattcttttatgagtatgtaattgttgtaacttatttactattgaattgtttattatg |
13413896 |
T |
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