View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18092_low_2 (Length: 538)

Name: NF18092_low_2
Description: NF18092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18092_low_2
NF18092_low_2
[»] chr5 (5 HSPs)
chr5 (11-522)||(40181567-40182084)
chr5 (413-474)||(40180938-40180999)
chr5 (326-361)||(38606229-38606264)
chr5 (432-501)||(38606068-38606137)
chr5 (444-501)||(41885617-41885674)
[»] chr8 (7 HSPs)
chr8 (407-514)||(44459244-44459351)
chr8 (407-514)||(44466777-44466884)
chr8 (432-501)||(34502619-34502688)
chr8 (326-357)||(44459145-44459176)
chr8 (326-357)||(44466678-44466709)
chr8 (432-514)||(44459962-44460044)
chr8 (432-514)||(44467495-44467577)
[»] chr1 (1 HSPs)
chr1 (413-514)||(46358821-46358922)


Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 11 - 522
Target Start/End: Complemental strand, 40182084 - 40181567
Alignment:
Q  11 agaagcataggttagagttcaacattctcaatcgctcagtaaacctaaacctagccgtgtgtgtgccgtttgtctccaaccgattctcactcgcaaacta 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40182084 agaaacataggttagagttcaacattctcaatcgctcagtaaacctaaacctagccgtgtgtgtgccgtctgtctccaaccgattctcactcgcaaacta 40181985  T
Q  111 tatataagaagatgtgggtgtcgtttgcagcaagatatggcaggaactacatcacttcttctt------cttcctcctcatcatcatccacacgaagaat 204  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||| |||||||||||||||||||||    
T  40181984 tatatatgcagatgtgggtgtcgtttgcagcaagatatggcaggaactacatcacttcttcttcttcttcttcctccttatcatcatccacacgaagaat 40181885  T
Q  205 tcctaaccctaacaaggtcattttctccaactttctaagtcaatcatcatcatcatccacttcatgtaatccctcgtttacatatcgtgacaacgacgac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181884 tcctaaccctaacaaggtcattttctccaactttctaagtcaatcatcatcatcatccacttcatgtaatccctcgtttacatatcgtgacaacgacgac 40181785  T
Q  305 aacgtcatcaccgcctccaaagatttccagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcaggtacaacaaagacttgaccaatctag 404  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181784 aacgtcatcaccgcctccaaagatttacagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcaggtacaacaaagacttgaccaatctag 40181685  T
Q  405 ttcaacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatata 504  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40181684 ttcaacatcatcaacaacactttctaatcagtgttattgaaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaatcttatata 40181585  T
Q  505 cttcataaagatgctttg 522  Q
    ||||||||||||||||||    
T  40181584 cttcataaagatgctttg 40181567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 474
Target Start/End: Complemental strand, 40180999 - 40180938
Alignment:
Q  413 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaac 474  Q
    ||||||||| | ||| || ||||||||||| |||||||||||||||||||||| | ||||||    
T  40180999 catcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaac 40180938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 38606264 - 38606229
Alignment:
Q  326 gatttccagaaagtgatgagtcttcttagtaatgct 361  Q
    |||||||| |||||||||||||||||||||||||||    
T  38606264 gatttccataaagtgatgagtcttcttagtaatgct 38606229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 501
Target Start/End: Complemental strand, 38606137 - 38606068
Alignment:
Q  432 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 501  Q
    ||||||||||| |||||||||||||||| ||||||| | |||||| ||| ||  ||||||| || |||||    
T  38606137 tcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat 38606068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 501
Target Start/End: Original strand, 41885617 - 41885674
Alignment:
Q  444 aaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 501  Q
    ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| ||||    
T  41885617 aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataattttat 41885674  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 407 - 514
Target Start/End: Original strand, 44459244 - 44459351
Alignment:
Q  407 caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact 506  Q
    |||||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||    
T  44459244 caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact 44459343  T
Q  507 tcataaag 514  Q
    | ||||||    
T  44459344 ttataaag 44459351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 407 - 514
Target Start/End: Original strand, 44466777 - 44466884
Alignment:
Q  407 caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact 506  Q
    |||||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||    
T  44466777 caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact 44466876  T
Q  507 tcataaag 514  Q
    | ||||||    
T  44466877 ttataaag 44466884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 501
Target Start/End: Complemental strand, 34502688 - 34502619
Alignment:
Q  432 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 501  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||| | ||||| ||||||||    
T  34502688 tcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttat 34502619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 357
Target Start/End: Original strand, 44459145 - 44459176
Alignment:
Q  326 gatttccagaaagtgatgagtcttcttagtaa 357  Q
    ||||||||||||||||||||||||||||||||    
T  44459145 gatttccagaaagtgatgagtcttcttagtaa 44459176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 357
Target Start/End: Original strand, 44466678 - 44466709
Alignment:
Q  326 gatttccagaaagtgatgagtcttcttagtaa 357  Q
    ||||||||||||||||||||||||||||||||    
T  44466678 gatttccagaaagtgatgagtcttcttagtaa 44466709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 514
Target Start/End: Original strand, 44459962 - 44460044
Alignment:
Q  432 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 514  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44459962 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44460044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 514
Target Start/End: Original strand, 44467495 - 44467577
Alignment:
Q  432 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 514  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44467495 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44467577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 514
Target Start/End: Original strand, 46358821 - 46358922
Alignment:
Q  413 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataa 512  Q
    ||||||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||| ||||    
T  46358821 catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa 46358920  T
Q  513 ag 514  Q
    ||    
T  46358921 ag 46358922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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