View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18092_low_3 (Length: 458)
Name: NF18092_low_3
Description: NF18092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18092_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 111 - 419
Target Start/End: Complemental strand, 33499614 - 33499307
Alignment:
| Q |
111 |
cttaaggaaaattctgcaactacatcagatcctgcaaacattgagttggagcaagatgagtttcattttgtcgtcaattcacaccatat---aagattag |
207 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| || | ||||||| |||||| ||||||| | ||||||||||||||||||||| ||| |||| |
|
|
| T |
33499614 |
cttaaggaaaaatctgcaaatacatcagatcctgcaaccaataagttggaccaagataagtttcactctgtcgtcaattcacaccatattttaag-ttag |
33499516 |
T |
|
| Q |
208 |
ggtcatcacaaaaggctatggtgtcatgtgaggacataagctttgaggcggaatcaactccagtgatatgtgtagtagatcaacaagtactgaattatct |
307 |
Q |
| |
|
|||| || |||||||||||||||| |||| || |||||||||||| | |||||||||||| |||||||||||||||||||||||| |||| || ||| |
|
|
| T |
33499515 |
ggtcgtcgcaaaaggctatggtgttatgtaagaacataagctttgcgacggaatcaactcttgtgatatgtgtagtagatcaacaaatactagatgctct |
33499416 |
T |
|
| Q |
308 |
ttttgagcaagagcaatatgtaaatcttcctaagccttggaagatgtttacctatgtgacaaagccgatgcttgatcgatcgccttgtcttgattatgag |
407 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| || |||||||| | |||||||||||| |
|
|
| T |
33499415 |
ttttgagcaagatcaatatgtaaatcttcctaagcctt---agatgtttacctatgtaacaaagtcgatgctttatggatcgcctagacttgattatgag |
33499319 |
T |
|
| Q |
408 |
gtatttatcttt |
419 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
33499318 |
gtctttatcttt |
33499307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 203 - 415
Target Start/End: Complemental strand, 33487920 - 33487708
Alignment:
| Q |
203 |
attagggtcatcacaaaaggctatggtgtcatgtgaggacataagctttgaggcggaatcaactccagtgatatgtgtagtagatcaacaagtactgaat |
302 |
Q |
| |
|
||||||||| || | ||||| ||| |||| ||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| ||| |
|
|
| T |
33487920 |
attagggtcgtcgcgaaaggttatagtgttatgcaatgacataagctttgcggcggaatcaactcctgtgatatgtgtagtagatctacaagtactaaat |
33487821 |
T |
|
| Q |
303 |
tatctttttgagcaagagcaatatgtaaatcttcctaagccttggaagatgtttacctatgtgacaaagccgatgcttgatcgatcgccttgtcttgatt |
402 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| || | ||||||||| |
|
|
| T |
33487820 |
tatctttgtgagcaagagcgatatgtatatcttcctaagccttgggagatgtttacctatgtgacaaagccgattcttgatcgattgcgtagtcttgatt |
33487721 |
T |
|
| Q |
403 |
atgaggtatttat |
415 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33487720 |
ctgaggtatttat |
33487708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 240 - 414
Target Start/End: Complemental strand, 33516164 - 33515990
Alignment:
| Q |
240 |
gacataagctttgaggcggaatcaactccagtgatatgtgtagtagatcaacaagtactgaattatctttttgagcaagagcaatatgtaaatcttccta |
339 |
Q |
| |
|
|||||||||| || | |||||||||||| ||||| |||||| | |||| |||| |||| | | ||||| |||||||||||||||| ||||||||| || |
|
|
| T |
33516164 |
gacataagctctgggatggaatcaactcctgtgatttgtgtaatggatctacaaatactagactctctttgtgagcaagagcaatatttaaatcttcata |
33516065 |
T |
|
| Q |
340 |
agccttggaagatgtttacctatgtgacaaagccgatgcttgatcgatcgccttgtcttgattatgaggtattta |
414 |
Q |
| |
|
|||||| ||| ||||| ||||| ||||| |||||| ||| ||||| ||| ||||||| ||||||||||||| |
|
|
| T |
33516064 |
gaccttgggagagctttacttatgtaacaaaaccgatgtttggtcgattgccaagtcttgactatgaggtattta |
33515990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 33516485 - 33516422
Alignment:
| Q |
16 |
attttatcatttgcttgcactgcttgctgcaaaggcaatcttgaagcctcactgaaggagaaat |
79 |
Q |
| |
|
||||||||| | ||||||||||| ||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
33516485 |
attttatcaatcgcttgcactgcatgctgcagagacaatcttgaagcctcactgaaggagaaat |
33516422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 200 - 402
Target Start/End: Complemental strand, 55445664 - 55445459
Alignment:
| Q |
200 |
aagattagggtcatcacaaaaggctatggtgtcatgtgaggacataagctttgaggcggaatcaactccagtgatatgtgtagtagatcaacaagtactg |
299 |
Q |
| |
|
|||||||||||| || ||||||||| | |||| |||||| |||||||| | || | |||||||||||||||||| ||||||||||||||| | |||| |
|
|
| T |
55445664 |
aagattagggtcgtcgcaaaaggctctagtgttatgtgatgacataagttgtgggatggaatcaactccagtgatttgtgtagtagatcaaaatatacta |
55445565 |
T |
|
| Q |
300 |
aattatctttttgagcaagag---caatatgtaaatcttcctaagccttggaagatgtttacctatgtgacaaagccgatgcttgatcgatcgccttgtc |
396 |
Q |
| |
|
|| | |||||||||||||||| |||||| |||||||||||| |||||||| || ||||||||||||||||| |||||||||| | |||| || ||| |
|
|
| T |
55445564 |
aactctctttttgagcaagagcaacaatatataaatcttcctaggccttggatgaactttacctatgtgacaaaaccgatgcttggtgcatcgtctcgtc |
55445465 |
T |
|
| Q |
397 |
ttgatt |
402 |
Q |
| |
|
|||||| |
|
|
| T |
55445464 |
ttgatt |
55445459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 419
Target Start/End: Original strand, 55470580 - 55470682
Alignment:
| Q |
317 |
agagcaatatgtaaatcttcctaagccttggaagatgtttacctatgtgacaaagccgatgcttgatcgatcgccttgtcttgattatgaggtatttatc |
416 |
Q |
| |
|
||||||| || |||||||||||| ||||||| || |||||||||| |||||| ||||||||| || |||| || ||||||| ||||||||||||| | |
|
|
| T |
55470580 |
agagcaacatctaaatcttcctaggccttggttgaactttacctatgagacaaaaccgatgcttcgtccatcgtctggtcttgaatatgaggtatttaac |
55470679 |
T |
|
| Q |
417 |
ttt |
419 |
Q |
| |
|
||| |
|
|
| T |
55470680 |
ttt |
55470682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University