View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18092_low_5 (Length: 330)
Name: NF18092_low_5
Description: NF18092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18092_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 52925799 - 52926126
Alignment:
| Q |
1 |
gttgcacagcctccaaaagtttctcataaacttgtctagcagtgagatcctccacctgaaatgatggtgaaaattagcgttagtatatatgtttgttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52925799 |
gttgcacagcctccaaaagtttctcataaacttgtctagcagtgagatcctccacctgaaatgatggtgaaaattagcattagtatatatgtttgttgag |
52925898 |
T |
|
| Q |
101 |
aaatacttactacttggttaagttgaagaagacatgactgaccacaagaagctttgacttgttattccatcctctctgaagagtcatttgactcaatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52925899 |
aaatacttactacttggttaagttgaagaagacatgactgaccacaagaagctttgacttgttattccatcctctctgaagagtcatttgactcaatctt |
52925998 |
T |
|
| Q |
201 |
aaacctaaaacctttcccataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtgacacgaacatcatcagcatttactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52925999 |
aaacctaaaacctttcccataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtgacacgaacatcatcagcatttactc |
52926098 |
T |
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| Q |
301 |
tggtgcttgcggagcggtgagcacgatc |
328 |
Q |
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||||| |||||||||||||||||||||| |
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| T |
52926099 |
tggtgattgcggagcggtgagcacgatc |
52926126 |
T |
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