View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18092_low_6 (Length: 288)
Name: NF18092_low_6
Description: NF18092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18092_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 10779105 - 10779377
Alignment:
| Q |
16 |
attttgatgacaaaagtgctactacgagatagtatatcagaatttaacatctaataaattgaaatcgatagcatctagatttttctttccttgagatggc |
115 |
Q |
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| T |
10779105 |
attttgatgacaaaagtgctactacgagatagtatatcagaatttaatatctaataaattgaaatcgatagcatctagattgttctttccttgagatggc |
10779204 |
T |
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| Q |
116 |
tctgagagaatatcttagcttggagcttcctctaatgtcggtcacgcgatacattctagccatctgcctggttaaagtatccaagcataatcccattagt |
215 |
Q |
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| T |
10779205 |
tccgagagaacatcttagtttgaagcttcctctaatgtcggtcacgcgatacattctagccatctgcctggttaaagtatccaagcataattccattagt |
10779304 |
T |
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| Q |
216 |
ttggagcttcctctaatgtcgcccacgcgatgtgaaaaaatttaagaagcataagagattcgagagtgaccct |
288 |
Q |
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|||||| |||||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
10779305 |
ttggagattcctctaatgtcgacctcgcgatataaaaaaatttaagaagcataagagattcgagagtgaccct |
10779377 |
T |
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