View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18094_low_1 (Length: 392)
Name: NF18094_low_1
Description: NF18094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18094_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 37413510 - 37413885
Alignment:
| Q |
1 |
aacaaaaagaatctatacatgtgtgtgttggaaatttattcttcaaccgtgaaggtggtgtgcgtcaatctacctctctaatatttgcagcttggtgaaa |
100 |
Q |
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| T |
37413510 |
aacaaaaagaatctatacatgtgtgtgttggaaatttattcttcaaccgtgaaggtggtgtgcgtcaatctacctctccaat--ttgcagcttggtgaaa |
37413607 |
T |
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| Q |
101 |
tcacggtaaaatcaatataattgggatacaagatttgaatatgcactaggtttgacgatataattctgttaaaaaatataggtttttgtcaaaattaatg |
200 |
Q |
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| T |
37413608 |
tcacggtaaaatcaatataattgggatacaagatttgaatatgcactaggtttgacgatataattctgttaaaaaatataggtttttgtcaaaattaatg |
37413707 |
T |
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| Q |
201 |
tgtgaccatgataaaacaacatttagatagagagcatcatcgtaaaaagatgtattttattgttgtagcacaaaattactgtctaaacttccaaatgcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37413708 |
tgtgaccatgataaaacaacatttagatagagagcatcatcgtaaaaagatgtattttattgttgtagcacaaaattactgtctaaacttccaaatgcac |
37413807 |
T |
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| Q |
301 |
tctttcatag-aataaaaacttcaaaatgcatgcactcacacttttattgttccaattaagagtgaatacacaaaaac |
377 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37413808 |
tctttcatagaaaaaaaaacttcaaaatgcatgcactcacacttttattgttccaattaggagtgaatacacaaaaac |
37413885 |
T |
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