View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18094_low_2 (Length: 235)
Name: NF18094_low_2
Description: NF18094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18094_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 35900573 - 35900374
Alignment:
| Q |
16 |
cataggcttcaaattagaaatgaaatccatctttagttcaagataaatcaaacaccgaaaacatcatcattttaacataatgagcctaaaagatttgtac |
115 |
Q |
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| T |
35900573 |
cataagcttcaaattagaaatgaaatccatctttagttcaagataaatcaaacaccgaaaacatcatcattttaacataatgagcctaaaagatttgtac |
35900474 |
T |
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| Q |
116 |
tgctagccaaaagtagagttaattaatgccaaatatgaccagaatctttctcccttggactagatgctttttacattgattttaaaaggtgtatatcata |
215 |
Q |
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| T |
35900473 |
tgctagccaaaagtagagttaattaatgccaaatatgaccagaatctttctcccttggactagatgttttttacattgattttaaaaggtgtatatcata |
35900374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 35882888 - 35882821
Alignment:
| Q |
16 |
cataggcttcaaattagaaatgaaatccatctttagttcaagataaatcaaacaccgaaaacatcatc |
83 |
Q |
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| T |
35882888 |
cataagcttcaaattagaaatgaaatccatctttagttcaagataaatcgaacagtgaaaacatcatc |
35882821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 35882717 - 35882635
Alignment:
| Q |
118 |
ctagccaaaagtagagttaattaatgccaaatatgaccagaatctttctcccttggactagatgctttttacattgattttaa |
200 |
Q |
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| T |
35882717 |
ctagccaaaagtagagctaattaacgccaaccataaccagaatcttcctcccttgaactagatgctttttagattgattttaa |
35882635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 10211450 - 10211529
Alignment:
| Q |
16 |
cataggcttcaaattagaaatgaaatccatctttagttcaagataaatcaaacaccg-aaaacatcatcattttaacataat |
96 |
Q |
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|||| |||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||| ||||||||||| |
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| T |
10211450 |
cataagcttcaaattagaaatgaaatccacctttggttcaagataaatcaaacactgaaaaacatcatc--tttaacataat |
10211529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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