View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18095_high_10 (Length: 251)
Name: NF18095_high_10
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18095_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 33497665 - 33497426
Alignment:
| Q |
1 |
ttttaacctgatcaagaaggagaaagttcaaatagtatagtgagaaaatagagatgtttgtgtcctaaatacatttttgatgtgccaaatcggaaaagat |
100 |
Q |
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| T |
33497665 |
ttttaacctgatcaagaaggagaaagttcaaatagtatagtgagaaaatagagatgtttgtgtcctaaatacatttttgatgtgccaaatcggaaaagat |
33497566 |
T |
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| Q |
101 |
atagaaaaaataagaaacatgacatatatgatttagataaacttcaaggggaaaaaagaaatacttgattttcaaacgattaaaattattatgatcatgc |
200 |
Q |
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| T |
33497565 |
atagaaaaaataagaaacatgacatatatgatttagataaacttcaaggggaaaaaggaaatacttgattttcaaacgattaaaattattatgatcatgc |
33497466 |
T |
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| Q |
201 |
aagtattatctatgaactgattgaagatgaaaatgaattt |
240 |
Q |
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| T |
33497465 |
aagtattatctatgaactgattgaagatgaaaatgaattt |
33497426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 33484955 - 33484911
Alignment:
| Q |
196 |
catgcaagtattatctatgaactgattgaagatgaaaatgaattt |
240 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33484955 |
catgcaagtattatcttcgaactgattgaagatgaaaatgaattt |
33484911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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