View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18095_high_13 (Length: 236)
Name: NF18095_high_13
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18095_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8422154 - 8421935
Alignment:
| Q |
1 |
gagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttgag |
100 |
Q |
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| T |
8422154 |
gagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttgag |
8422055 |
T |
|
| Q |
101 |
taatggtttttgtttttgtgtttggtgatttagaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcattattggcattgtgtg |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8422054 |
taatggtttttgtttttgtttttggtgatttagaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtgtg |
8421955 |
T |
|
| Q |
201 |
tatgagttgaccgtttaatt |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
8421954 |
tatgagttgaccgtttaatt |
8421935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8400577 - 8400358
Alignment:
| Q |
1 |
gagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8400577 |
gagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttgag |
8400478 |
T |
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| Q |
101 |
taatggtttttgtttttgtgtttggtgatttagaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcattattggcattgtgtg |
200 |
Q |
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| T |
8400477 |
taatggtttttgtttttgtttttggtgatttagaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtgtg |
8400378 |
T |
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| Q |
201 |
tatgagttgaccgtttaatt |
220 |
Q |
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| T |
8400377 |
tttgagttggccgtttaatt |
8400358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8368833 - 8369047
Alignment:
| Q |
1 |
gagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttgag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368833 |
gagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttgag |
8368932 |
T |
|
| Q |
101 |
taatggtttttgtttttgtgtttggtgatttagaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcattattggcattgtgtg |
200 |
Q |
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| T |
8368933 |
taatggtttttgtttttgtttttggtgatttagaagaaggggaatagtacttgggtg---aatgataatcattttcttgaattattattgggattgtgtg |
8369029 |
T |
|
| Q |
201 |
tatgagttgaccgtttaa |
218 |
Q |
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| | ||||| |||||||| |
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| T |
8369030 |
tgtaagttggccgtttaa |
8369047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 8394879 - 8394781
Alignment:
| Q |
1 |
gagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttga |
99 |
Q |
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|||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| ||| | | ||||||||||||| |
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| T |
8394879 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga |
8394781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 8395122 - 8395024
Alignment:
| Q |
1 |
gagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttga |
99 |
Q |
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| T |
8395122 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga |
8395024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 8406450 - 8406548
Alignment:
| Q |
1 |
gagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttga |
99 |
Q |
| |
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|||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| ||| | | ||||||||||||| |
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| T |
8406450 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga |
8406548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 8412570 - 8412668
Alignment:
| Q |
1 |
gagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttga |
99 |
Q |
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|
|||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| ||| | | ||||||||||||| |
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| T |
8412570 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga |
8412668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 8434668 - 8434766
Alignment:
| Q |
1 |
gagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttga |
99 |
Q |
| |
|
|||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| ||| | | ||||||||||||| |
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| T |
8434668 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga |
8434766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 8431629 - 8431670
Alignment:
| Q |
35 |
gttcgccaatgttttgatgcatttctattctgtcggatacag |
76 |
Q |
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| T |
8431629 |
gttcgccaatgttgtgatgcatttctattctgtctgatacag |
8431670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 55331437 - 55331483
Alignment:
| Q |
52 |
tgcatttctattctgtcggatacagattcaagaattgcatagagttg |
98 |
Q |
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|||||||| ||||||||||||||||| || | ||||||||||||||| |
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| T |
55331437 |
tgcatttcgattctgtcggatacagaatctaaaattgcatagagttg |
55331483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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