View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18095_high_7 (Length: 323)

Name: NF18095_high_7
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18095_high_7
NF18095_high_7
[»] chr4 (3 HSPs)
chr4 (1-156)||(33497727-33497882)
chr4 (179-308)||(33497882-33498011)
chr4 (59-275)||(33485011-33485216)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 33497727 - 33497882
Alignment:
Q  1 gatcacgatccttaaaatcccccatctagctagggttcttaaaggggcaatagatctactagggttcttaaaattcgatccttcttgttaccatagatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33497727 gatcacgatccttaaaatcccccatctagctagggttcttaaaggggcaatagatctactagggttcttaaaattcgatccttcttgttaccatagatag 33497826  T
Q  101 ggatctggcccgtatacagtgtcaaacatggatcgtttactatgattagtatcttt 156  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33497827 ggatctggcccgtatacaatgtcaaacatggatcgtttactatgattagtatcttt 33497882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 179 - 308
Target Start/End: Original strand, 33497882 - 33498011
Alignment:
Q  179 taattaatctaaaactcaatttcctttttgcgttaatctctggagttcggtcgtgaagtaaatacgtcttaaccaaaaatcgttccacccaggaatggaa 278  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33497882 taattaatctaaaactcaatttcctttttgcgttaatctttggagttcggtcgtgaagtaaatacgtcttaaccaaaaatcgttccacccaggaatggaa 33497981  T
Q  279 cccgtgttctcctcaaccgttcgtcctttg 308  Q
    ||||||||||||||||||||||||||||||    
T  33497982 cccgtgttctcctcaaccgttcgtcctttg 33498011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 275
Target Start/End: Original strand, 33485011 - 33485216
Alignment:
Q  59 ctagggttcttaaaattcgatccttcttgttaccatagatagggatctggcccgtatacagtgtcaaacatggatcgtttactatgattagtatctttga 158  Q
    |||||||||||||| || |||||||||||||||| ||| |||||| | |||||| ||||| |||||||| |||||| ||||| ||||||||| |||        
T  33485011 ctagggttcttaaacttggatccttcttgttaccgtagttagggaccaggcccgaatacaatgtcaaacttggatcatttacaatgattagtctct---- 33485106  T
Q  159 ttccaccttgattgttgacctaattaatctaaaactcaatttcctttttgcgttaatctctggagttcggtcgtgaagtaaatacgtcttaaccaaaaat 258  Q
           ||||||||||| ||||||||||||||||||||||| ||| ||| ||||| ||  |  ||| || ||||| |||| ||   |||| ||||||||    
T  33485107 -------ttgattgttgaactaattaatctaaaactcaattttcttcttgtgttaaccttcgaggtttggccgtgaggtaagtataacttagccaaaaat 33485199  T
Q  259 cgttccacccaggaatg 275  Q
     ||||||||||||||||    
T  33485200 tgttccacccaggaatg 33485216  T

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