View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18095_high_9 (Length: 271)

Name: NF18095_high_9
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18095_high_9
NF18095_high_9
[»] chr8 (1 HSPs)
chr8 (2-256)||(1152721-1152975)
[»] chr3 (13 HSPs)
chr3 (201-256)||(29751880-29751935)
chr3 (196-256)||(29713009-29713069)
chr3 (196-256)||(30223126-30223186)
chr3 (196-251)||(29649068-29649123)
chr3 (196-256)||(29746946-29747006)
chr3 (199-251)||(30201207-30201259)
chr3 (196-251)||(30227382-30227437)
chr3 (208-242)||(36309764-36309798)
chr3 (196-256)||(30230367-30230427)
chr3 (195-254)||(29856877-29856936)
chr3 (208-251)||(30239068-30239111)
chr3 (217-251)||(30214753-30214787)
chr3 (208-242)||(36333945-36333979)
[»] chr6 (2 HSPs)
chr6 (202-251)||(5569421-5569470)
chr6 (218-251)||(5574415-5574448)
[»] chr7 (2 HSPs)
chr7 (196-247)||(16644732-16644783)
chr7 (196-247)||(17619093-17619144)
[»] chr5 (2 HSPs)
chr5 (200-251)||(11634998-11635049)
chr5 (219-248)||(16053597-16053626)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 1152721 - 1152975
Alignment:
Q  2 gagaagaataatattacttaaacgaacaagataaaattaattacctaggactaggagcagtatatttgagaatgtcatcggtcccaaataattcaagact 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1152721 gagaagaataatattacttaaacgaacaagataaaattaattacctaggactaggagcagtatatttgagaatgtcatcggtcccaaataattcaagact 1152820  T
Q  102 aatgtcttctacatgaccacgacttagatcaatggcatggccataaatcttatgtaaataatgataatctaatggaataacattgatattactaatgtga 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1152821 aatgtcttctacatgaccacgacttagatcaatggcatggccataaatcttatgtaaacaatgataatctaatggaataacattgatattactaatgtga 1152920  T
Q  202 atggtacgccacattagaggatccttgcaaatgttccaccaaagaggacaaacat 256  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  1152921 atggtacgccacattagaggatccttgcaaatgtgccaccacagaggacaaacat 1152975  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 29751935 - 29751880
Alignment:
Q  201 aatggtacgccacattagaggatccttgcaaatgttccaccaaagaggacaaacat 256  Q
    |||||||| |||||| |||||||||||||||| |||||||||||||||||||||||    
T  29751935 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaacat 29751880  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 29713069 - 29713009
Alignment:
Q  196 atgtgaatggtacgccacattagaggatccttgcaaatgttccaccaaagaggacaaacat 256  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| | || ||||||||    
T  29713069 atgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaagaacaaacat 29713009  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 30223186 - 30223126
Alignment:
Q  196 atgtgaatggtacgccacattagaggatccttgcaaatgttccaccaaagaggacaaacat 256  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||  |||||| ||||    
T  30223186 atgtgaatggtgcgccacatgagaggatccttgcaaatgttccaccaataaggacacacat 30223126  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 29649123 - 29649068
Alignment:
Q  196 atgtgaatggtacgccacattagaggatccttgcaaatgttccaccaaagaggaca 251  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| | ||||||||    
T  29649123 atgtgaatggtacgccacatgagaggatccttacaaatgttccacgatagaggaca 29649068  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 29746946 - 29747006
Alignment:
Q  196 atgtgaatggtacgccacattagaggatccttgcaaatgttccaccaaagaggacaaacat 256  Q
    |||||||||||||||||||||||||| |||| |||||| |||| ||| | |||||||||||    
T  29746946 atgtgaatggtacgccacattagagggtcctggcaaattttccgccacaaaggacaaacat 29747006  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 30201259 - 30201207
Alignment:
Q  199 tgaatggtacgccacattagaggatccttgcaaatgttccaccaaagaggaca 251  Q
    ||||||||  ||||||| |||||||||||||||||||||||||| ||||||||    
T  30201259 tgaatggtgtgccacatgagaggatccttgcaaatgttccaccatagaggaca 30201207  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 30227437 - 30227382
Alignment:
Q  196 atgtgaatggtacgccacattagaggatccttgcaaatgttccaccaaagaggaca 251  Q
    |||| |||||| |||||||| |||||||||||||||||||||||| | ||||||||    
T  30227437 atgtaaatggtgcgccacatgagaggatccttgcaaatgttccactatagaggaca 30227382  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 36309764 - 36309798
Alignment:
Q  208 cgccacattagaggatccttgcaaatgttccacca 242  Q
    |||||||||||||||||||||||||||||||||||    
T  36309764 cgccacattagaggatccttgcaaatgttccacca 36309798  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 30230427 - 30230367
Alignment:
Q  196 atgtgaatggtacgccacattagaggatccttgcaaatgttccaccaaagaggacaaacat 256  Q
    ||||||||||| ||||||||  ||||||||||||||||| ||||||||  |||||| ||||    
T  30230427 atgtgaatggtgcgccacatgcgaggatccttgcaaatgctccaccaataaggacacacat 30230367  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 29856936 - 29856877
Alignment:
Q  195 aatgtgaatggtacgccacattagaggatccttgcaaatgttccaccaaagaggacaaac 254  Q
    ||||||||||||||||||||  |||||||| || || |||| |||||| |||||||||||    
T  29856936 aatgtgaatggtacgccacaggagaggatctttacatatgtcccaccatagaggacaaac 29856877  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 30239111 - 30239068
Alignment:
Q  208 cgccacattagaggatccttgcaaatgttccaccaaagaggaca 251  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||    
T  30239111 cgccacatgagaggatccttgcatatgttccaccatagaggaca 30239068  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 30214787 - 30214753
Alignment:
Q  217 agaggatccttgcaaatgttccaccaaagaggaca 251  Q
    |||||||||||||||||||||||||| ||||||||    
T  30214787 agaggatccttgcaaatgttccaccatagaggaca 30214753  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 36333945 - 36333979
Alignment:
Q  208 cgccacattagaggatccttgcaaatgttccacca 242  Q
    |||||||| ||||||||||||||||||||||||||    
T  36333945 cgccacatgagaggatccttgcaaatgttccacca 36333979  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 5569421 - 5569470
Alignment:
Q  202 atggtacgccacattagaggatccttgcaaatgttccaccaaagaggaca 251  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  5569421 atggtacgccacacaagaggatccttgcaaatgttccaccatagaggaca 5569470  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 5574415 - 5574448
Alignment:
Q  218 gaggatccttgcaaatgttccaccaaagaggaca 251  Q
    ||||||||||||||||||||||||| ||||||||    
T  5574415 gaggatccttgcaaatgttccaccatagaggaca 5574448  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 16644732 - 16644783
Alignment:
Q  196 atgtgaatggtacgccacattagaggatccttgcaaatgttccaccaaagag 247  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||    
T  16644732 atgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagag 16644783  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 17619093 - 17619144
Alignment:
Q  196 atgtgaatggtacgccacattagaggatccttgcaaatgttccaccaaagag 247  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||    
T  17619093 atgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagag 17619144  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 11635049 - 11634998
Alignment:
Q  200 gaatggtacgccacattagaggatccttgcaaatgttccaccaaagaggaca 251  Q
    |||||||||||||||| |||||||||||||| ||| ||||||| ||||||||    
T  11635049 gaatggtacgccacatgagaggatccttgcatatgctccaccatagaggaca 11634998  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 16053597 - 16053626
Alignment:
Q  219 aggatccttgcaaatgttccaccaaagagg 248  Q
    ||||||||||||||||||||||||||||||    
T  16053597 aggatccttgcaaatgttccaccaaagagg 16053626  T

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