View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18095_low_1 (Length: 1765)
Name: NF18095_low_1
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18095_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 1554; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 1554; E-Value: 0
Query Start/End: Original strand, 46 - 1751
Target Start/End: Original strand, 36162357 - 36164064
Alignment:
| Q |
46 |
tatgtgtagtttagcactaatatttgatgttaccgtatacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcat |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36162357 |
tatgtgtagtttagcactaatatttgatgttaccgtatacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcat |
36162456 |
T |
|
| Q |
146 |
ttgaagttaattcttccatgttttaactcaaatccgctggtccatgttcttgagcaatgccacatgcttcaggttctcataattcagagcaacaaggttt |
245 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36162457 |
ttgaagttaattcttctatgttttaactcaaatctgctgggccatgttcttgagcaatgccacatgcttcaagttctcataattcagagcaacaaggttt |
36162556 |
T |
|
| Q |
246 |
gtttacttctcaagtttaattcaaacaatctttggtctgtctatatatacatgcacacaaatatatttttgagtctcccttattgctgataggaggaacc |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
36162557 |
gtttacttctcaagtttaattcaaacaatctttggtctgtctatatatacatgcacacaaatatatttttgagtctcccttgttgcttataggaggaacc |
36162656 |
T |
|
| Q |
346 |
accaccattgagaacatggcagccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattcatttagaagggtatcaaggacttgaa |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36162657 |
accaccattgagaacatggcagccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattcatttagaagggtatcaaggacttgaa |
36162756 |
T |
|
| Q |
446 |
gatgagctgacatttgctgaatatattttgcggaacggacttgttttgaagacaatgcttatttttgttgatatttcaatggacaaaaaagacaaggact |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36162757 |
gatgagctgacatttgctgaatatattttgcggaacggactttttttgaagacaatgcttatttttgttgatatttcaatggacaaaaaggacaaggact |
36162856 |
T |
|
| Q |
546 |
gctctctcaaaagattaactgacataccaaggggctctatcatgtgtcaacttgaatttgacccagctgtatctccttaaggtgaaacctcttgctgtcc |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36162857 |
gctctctcaaaagattaactgacataccaaggggctctatcatgtgtcaacttgaatttgacccagctgtatctccttaaggtgaagcctcttgctgtcc |
36162956 |
T |
|
| Q |
646 |
nnnnnnn-atccgtcttactgcatttaagttgattaagactggccttgtatttttactaaactatctgtcttgagttcttgacaattggatgtgccttgt |
744 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36162957 |
ttttttttatccgtcttactgcattaaagttgattaagactggccttgtatttttactaaactatctgacttgagttcttgacaattggatgtgccttgt |
36163056 |
T |
|
| Q |
745 |
atttttacacgcttgttaattttgccctattttaaactatgctgtggtataactatgtaactccatacgtatccaaattttctttgatttatttgttttc |
844 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36163057 |
atttttacacgcttgttaattttgccctattttaaactatgctgtggtataactatgtaactccatgcgtatccaaattttctttgatttatttgttttc |
36163156 |
T |
|
| Q |
845 |
tcataacaatttttgttttatgacttcgacctttgcgagagttgaaattcactaaattataagtttgagaaagtgttggccttctagatttcatgccact |
944 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36163157 |
tcataacaatttttgttttatgacttcgacctttgcgagagttgaaatgcactaaattataagtttgagaaagtgttggccttctagatttcatgccact |
36163256 |
T |
|
| Q |
945 |
taatgcacttagcggttttcttctgtttactctattattgctaacaaatctatatttaactatgtacttttatgttggcatagcaatattttcaattcat |
1044 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36163257 |
taatgtacttagcggttttcttctgtttactctattattgctaacaaatctatatttaactatgtacttttatgatggcatagcaatattttcaattcat |
36163356 |
T |
|
| Q |
1045 |
ggtatagtctgagannnnnnn-attttggattaccaaatcacttattagtcaactccaaatgaatgccaattatattaacagtatataaggtaaaagtta |
1143 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36163357 |
ggtatagtctgagattttttttattttggattaccaaatcacttattagtcaactccaaatgaataccaattatattaacagtatataaggtaaaagtta |
36163456 |
T |
|
| Q |
1144 |
tagtcatacctgtgaggactcctatgcactcatttggaaccttaaattcttcatctgaagctccttaagtttataatagtttgtaaacttttccgttggt |
1243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36163457 |
tagtcatacctgtgaggactcctatgcactcatttggaaccttaaattcttcatatgaagctccttaagtttataatagtttgtaaacttttccgttggt |
36163556 |
T |
|
| Q |
1244 |
tcgcttattttggagtggcctctggttgtggcctgttgctggctatgtttggtggaattagtgggagtgtggagttttgtgggggtcggttttgctaatc |
1343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36163557 |
tcgcttattttggagtggcctctggttgtggcctgttgctggctttgtttggtggatttagtgggagtgtggagttttgtgggggtcggttttgctaatg |
36163656 |
T |
|
| Q |
1344 |
cggtgttctgttgatgtggagtggttaaggggaacatgttcgtgttggaagctgattttggctcttcgccatctttttccaaataattgttatttttgtt |
1443 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36163657 |
cggtgttctgttgatgtggagtggataaggggaacatgttcgtgttggaagctgattttggctcttcgccatctttttccaaataattgttatttttgtt |
36163756 |
T |
|
| Q |
1444 |
atcttagtagttagtgtgttttattcagatacgctctgaagttgactcttaaatgtggagtactagagtggttttggctttgaactcgttatgttgtctt |
1543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36163757 |
atcttagtagttagtgtgttttattcagatacgctctgaagttgactcttaaatgtggagtactagagtggttttggctttgaactcgttatgttgtctt |
36163856 |
T |
|
| Q |
1544 |
gatcgtctcagatattagaacttcagagggtttggctactttgtggacctcaacatgatactgaacttgtatttttgtggaagctcattagtcgtggtgt |
1643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36163857 |
gatcgtctcagatattagaacttcagagggtttggctactttgtggacctcaacatgatactgaacttgtatttttgtggaagctcattagtcgtggtgt |
36163956 |
T |
|
| Q |
1644 |
tcagttgtagaagtgtgttttttccttttcccactgtcaatgggatgagcagtgcgggttgtgcaatagtaggtattggagtgtgttggtgtgtggcatg |
1743 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36163957 |
tcagttgtagaagtgtgttttttccttttcccactgtcaatgggatgagcacaacgggttgtgcaatagtaggtattggagtgtgttggtgtgtggcatg |
36164056 |
T |
|
| Q |
1744 |
gtggttga |
1751 |
Q |
| |
|
|||||||| |
|
|
| T |
36164057 |
gtggttga |
36164064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 1e-88; HSPs: 19)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-88
Query Start/End: Original strand, 335 - 613
Target Start/End: Original strand, 30078769 - 30079047
Alignment:
| Q |
335 |
taggaggaaccaccaccattgagaacatggcagccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattcatttagaagggtatc |
434 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |||||||||||||||| | ||||||||||||| ||| |||| |||||||| ||||||| |||| |
|
|
| T |
30078769 |
taggaggaaccacgaccattgagaacatgggagccagagtcaacaacagtttttgaatgtctcaaatcccacctgacttatattcacatagaaggatatc |
30078868 |
T |
|
| Q |
435 |
aaggacttgaagatgagctgacatttgctgaatatattttgcggaacggacttgttttgaagacaatgcttatttttgttgatatttcaatggacaaaaa |
534 |
Q |
| |
|
||||| | |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30078869 |
aaggattggaagatgagctggcatttgctgactatattttgcggaacggacttgtattgaagacaatgcttatttttgttgatatttcaatggacaaaac |
30078968 |
T |
|
| Q |
535 |
agacaaggactgctctctcaaaagattaactgacataccaaggggctctatcatgtgtcaacttgaatttgacccagct |
613 |
Q |
| |
|
| ||||| | || |||||||||||||||||||||||||||| ||||||| | | ||| ||||| |||||||||||||| |
|
|
| T |
30078969 |
aaacaagtattgttctctcaaaagattaactgacataccaaagggctctgttacatgtgaacttaaatttgacccagct |
30079047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-80
Query Start/End: Original strand, 328 - 632
Target Start/End: Original strand, 26034640 - 26034944
Alignment:
| Q |
328 |
ttgctgataggaggaaccaccaccattgagaacatggcagccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattcatttagaa |
427 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||| ||| |||| ||| |||| ||||| |
|
|
| T |
26034640 |
ttgctggtaggaggaaccaccaccattgagaacatggcaactgaagtcaacaacagtttctgaatgtctcaaatcccacctgacctatgttcacatagaa |
26034739 |
T |
|
| Q |
428 |
gggtatcaaggacttgaagatgagctgacatttgctgaatatattttgcggaacggacttgttttgaagacaatgcttatttttgttgatatttcaatgg |
527 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||| || ||||| |
|
|
| T |
26034740 |
gggtatcaaggacttgaatatgagctgacatttgctgaatatattttgcagaacggacttgttttgaggacaatgttaatttttgttgatagtttaatgg |
26034839 |
T |
|
| Q |
528 |
acaaaaaagacaaggactgctctctcaaaagattaactgacataccaaggggctctatcatgtgtcaacttgaatttgacccagctgtatctccttaagg |
627 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||| | ||| ||| ||||||| ||| || |||||| | || |||||| ||||||| | ||||| |
|
|
| T |
26034840 |
acaaaacggacaaggaatgttctctcaaaagattaacaaatatatcaaagggctctgtcacttgccaacttaagttcgacccaactgtatcctcataagg |
26034939 |
T |
|
| Q |
628 |
tgaaa |
632 |
Q |
| |
|
||||| |
|
|
| T |
26034940 |
tgaaa |
26034944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 6e-72
Query Start/End: Original strand, 89 - 637
Target Start/End: Complemental strand, 25896008 - 25895438
Alignment:
| Q |
89 |
cagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgctggtcc |
188 |
Q |
| |
|
|||| |||| |||||||| |||||||| | ||||| || |||||| |||||| |||| | ||||| |||||||| ||||| ||||| ||| ||||| |
|
|
| T |
25896008 |
cagtcgccacttcatgccactgttctaaactatccagagtttcgcaatttacttcatctaaagttcattcttccctgtttcaactcgaatgtcttggtca |
25895909 |
T |
|
| Q |
189 |
atgttcttgagcaatgccacatgcttcaggttctcataattcagagcaacaaggtttgtttacttctcaagtttaattcaaacaatctttggtctgtcta |
288 |
Q |
| |
|
| || |||||| ||||||| |||||||| |||||||||||||| ||||| |||||||||| | ||||||||||||||| || |||| |||||| ||| | |
|
|
| T |
25895908 |
acgtgcttgagaaatgccagatgcttcaagttctcataattcaaagcaagaaggtttgttgagttctcaagtttaattaaatcaatttttggtatgttca |
25895809 |
T |
|
| Q |
289 |
tatatacatg----------------cacacaaatatatttttgag------tctcccttattgctgataggaggaaccaccaccattgagaacatggca |
366 |
Q |
| |
|
| ||| |||| |||| ||||||||||||||| | || ||| ||| || |||||| ||| | |||| || ||||||||||| |
|
|
| T |
25895808 |
tgtatgcatgtatgtatctatctatacacaaaaatatatttttgagggatgttgtctcttgttgttggtaggagaaactatcacctttaagaacatggca |
25895709 |
T |
|
| Q |
367 |
gccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattcatttagaagggtatcaaggacttgaagatgagctgacatttgctgaa |
466 |
Q |
| |
|
||| ||||||||||| ||| || ||||||||||||| ||| |||| |||||||| ||||||| ||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
25895708 |
gccagagtcaacaacggttcctgaatgtctcaaatcccacctgacctatattcacatagaaggatatcaaggatttgaagacgagcttacatttgctgaa |
25895609 |
T |
|
| Q |
467 |
tatattttgcggaacggacttgttttgaagacaatgcttatttttgttgatatttcaatggacaaaaaagacaaggactgctctctcaaaagattaactg |
566 |
Q |
| |
|
||| || || ||||||||||||||||| | |||||||||||||||||||||| ||||||| ||| || | ||| | ||| ||||||||||||||| |
|
|
| T |
25895608 |
tatcttctgaggaacggacttgttttgcaaacaatgcttatttttgttgatacttcaatgcacacaacgaataagtatctttctgtcaaaagattaactg |
25895509 |
T |
|
| Q |
567 |
acataccaaggggctctatcatgtgtcaacttgaatttgacccagctgtatctccttaaggtgaaacctct |
637 |
Q |
| |
|
| ||||||||||||||| ||| || |||||| ||||||||||||| || |||| ||||||||||| |||| |
|
|
| T |
25895508 |
atataccaaggggctctgtcacctgccaacttaaatttgacccagccgtctctctttaaggtgaaaactct |
25895438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 9e-68
Query Start/End: Original strand, 73 - 300
Target Start/End: Original strand, 26034354 - 26034581
Alignment:
| Q |
73 |
tgttaccgtatacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaac |
172 |
Q |
| |
|
||||| ||| |||| |||||| |||||||||| ||||||||| ||||||||||||||| | ||||||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
26034354 |
tgttatcgtctacaagcagtgttcaattcatgctcctgttctaaattatcctgaatttcacgatttacatcatctgaagttcattcttccatgtttcaac |
26034453 |
T |
|
| Q |
173 |
tcaaatccgctggtccatgttcttgagcaatgccacatgcttcaggttctcataattcagagcaacaaggtttgtttacttctcaagtttaattcaaaca |
272 |
Q |
| |
|
||||||| |||||||| || |||||| |||||| ||||||||| |||||||||||||||||||||||||| |||| | |||| |||||||||||||||| |
|
|
| T |
26034454 |
tcaaatcttctggtccacgtgcttgagaaatgccgcatgcttcaagttctcataattcagagcaacaaggtatgttaatttcttaagtttaattcaaaca |
26034553 |
T |
|
| Q |
273 |
atctttggtctgtctatatatacatgca |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
26034554 |
atctttggcctgtctatatatacatgca |
26034581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-51
Query Start/End: Original strand, 321 - 629
Target Start/End: Complemental strand, 25031027 - 25030719
Alignment:
| Q |
321 |
tcccttattgctgataggaggaaccaccaccattgagaacatggcagccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattca |
420 |
Q |
| |
|
|||||| |||||| |||||||||||| ||| || ||||||||| |||| |||||||||||||| || ||||| ||||||| ||| |||| | |||||| |
|
|
| T |
25031027 |
tcccttgttgctgttaggaggaaccatcacttttaagaacatgggagccaaagtcaacaacagttcctaaatgtttcaaatcccacctgacctttattca |
25030928 |
T |
|
| Q |
421 |
tttagaagggtatcaaggacttgaagatgagctgacatttgctgaatatattttgcggaacggacttgttttgaagacaatgcttatttttgttgatatt |
520 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||||| | |||||||| ||||| | |||| |
|
|
| T |
25030927 |
catagaaggatatcaaggatttgaagatgagctggcatttgctgaatatgttttgcagaacggacttgttttacacacaatgctcgtttttttcgataca |
25030828 |
T |
|
| Q |
521 |
tcaatggacaaaaaagacaaggactgctctctcaaaagattaactgacataccaaggggctctatcatgtgtcaacttgaatttgacccagctgtatctc |
620 |
Q |
| |
|
||||||||| || ||||| |||| ||| ||| |||||||||||| ||||||||||||||| ||| || |||||| ||||||| ||||||| |||| |
|
|
| T |
25030827 |
tcaatggacctaactaacaagaactgttctatcagaagattaactgatataccaaggggctctgtcacatgccaacttaaatttgattcagctgtgtctc |
25030728 |
T |
|
| Q |
621 |
cttaaggtg |
629 |
Q |
| |
|
| ||||||| |
|
|
| T |
25030727 |
cataaggtg |
25030719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 102; E-Value: 7e-50
Query Start/End: Original strand, 356 - 629
Target Start/End: Original strand, 20507324 - 20507597
Alignment:
| Q |
356 |
agaacatggcagccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattcatttagaagggtatcaaggacttgaagatgagctga |
455 |
Q |
| |
|
||||||||| |||| |||||||| ||||| || ||||||| |||| ||| |||| ||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
20507324 |
agaacatgggagccaaagtcaacatcagttcctaaatgtcttgaatcccacctgacctatattcatatagaaggatatcaaggatttgaagatgagctgg |
20507423 |
T |
|
| Q |
456 |
catttgctgaatatattttgcggaacggacttgttttgaagacaatgcttatttttgttgatatttcaatggacaaaaaagacaaggactgctctctcaa |
555 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| | |||||||| |||||| | |||| |||||||||| | | ||||| |||| ||| |||| |
|
|
| T |
20507424 |
catttgctgaatatattttgcgtaacggaattgttttacacacaatgctcatttttttcgatacttcaatggacctatcaaacaagaactgttctatcaa |
20507523 |
T |
|
| Q |
556 |
aagattaactgacataccaaggggctctatcatgtgtcaacttgaatttgacccagctgtatctccttaaggtg |
629 |
Q |
| |
|
||| |||||||| ||||||||||||||| ||| || |||||| |||||||| ||||||| ||| | ||||||| |
|
|
| T |
20507524 |
aagcttaactgatataccaaggggctctgtcacatgccaacttaaatttgactcagctgtgtcttcataaggtg |
20507597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 96; E-Value: 3e-46
Query Start/End: Original strand, 73 - 300
Target Start/End: Original strand, 30078476 - 30078703
Alignment:
| Q |
73 |
tgttaccgtatacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaac |
172 |
Q |
| |
|
||||| ||| |||||||||| |||| ||||||||||||||||| ||||||| ||||||||| ||||| |||| | ||||| |||||||| || || ||| |
|
|
| T |
30078476 |
tgttatcgtgtacatgcagttgccacttcatgcccctgttctaaattatccagaatttcgcaatttatttcatctaaagttcattcttccctgcttcaac |
30078575 |
T |
|
| Q |
173 |
tcaaatccgctggtccatgttcttgagcaatgccacatgcttcaggttctcataattcagagcaacaaggtttgtttacttctcaagtttaattcaaaca |
272 |
Q |
| |
|
|| |||| |||||| | | |||||| |||||||| |||||| |||||||||||| |||||| ||||||| ||| ||||||||||||||||| || || |
|
|
| T |
30078576 |
tcgaatcttctggtcgacgctcttgaaaaatgccacgtgcttcgagttctcataattaagagcagcaaggttcgttgacttctcaagtttaatttaatca |
30078675 |
T |
|
| Q |
273 |
atctttggtctgtctatatatacatgca |
300 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
30078676 |
atctttggtatgtctatatatacatgca |
30078703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 423 - 628
Target Start/End: Original strand, 26038611 - 26038816
Alignment:
| Q |
423 |
tagaagggtatcaaggacttgaagatgagctgacatttgctgaatatattttgcggaacggacttgttttgaagacaatgcttatttttgttgatatttc |
522 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
26038611 |
tagaaggatatcaaggatttgaagacgagctgacatttgccgaatttattttgcgtaacggacttgttttggagacaatgcttatttttgttgacatttc |
26038710 |
T |
|
| Q |
523 |
aatggacaaaaaagacaaggactgctctctcaaaagattaactgacataccaaggggctctatcatgtgtcaacttgaatttgacccagctgtatctcct |
622 |
Q |
| |
|
| |||||| || | ||||| || | ||| ||||||||||||| | ||||||||||||||| ||| || |||||| | ||||| ||| || |||||| |
|
|
| T |
26038711 |
attggacataacaaacaagtaccgttctatcaaaagattaacaaatataccaaggggctctgtcacttgccaacttaactttgatgcagatgggtctcct |
26038810 |
T |
|
| Q |
623 |
taaggt |
628 |
Q |
| |
|
|||||| |
|
|
| T |
26038811 |
taaggt |
26038816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 80; E-Value: 9e-37
Query Start/End: Original strand, 321 - 632
Target Start/End: Original strand, 25924087 - 25924398
Alignment:
| Q |
321 |
tcccttattgctgataggaggaaccaccaccattgagaacatggcagccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattca |
420 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| || ||||||| | |||| |||||| ||||||| || |||||||||||| ||| | || |||||||| |
|
|
| T |
25924087 |
tcccttgttgctaataggaggaacactcaccgttaagaacattggagccacagtcaataacagttcctggatgtctcaaatcccacctaacctatattca |
25924186 |
T |
|
| Q |
421 |
tttagaagggtatcaaggacttgaagatgagctgacatttgctgaatatattttgcggaacggacttgttttgaagacaatgcttatttttgttgatatt |
520 |
Q |
| |
|
||||||| ||||||||| |||||||||| || ||||||||||||||||||||||||| |||||||||||| || | |||||||||| ||| ||| | |
|
|
| T |
25924187 |
gatagaaggatatcaaggatgtgaagatgagttggcatttgctgaatatattttgcggaatggacttgttttggaggcgatgcttatttatgtcgatgct |
25924286 |
T |
|
| Q |
521 |
tcaatggacaaaaaagacaaggactgctctctcaaaagattaactgacataccaaggggctctatcatgtgtcaacttgaatttgacccagctgtatctc |
620 |
Q |
| |
|
||||||||| || | | ||| | || ||| ||||||||||| ||| || || ||||||||| || ||| || || |||||||||||| |||||| |
|
|
| T |
25924287 |
tcaatggacccaacaaataagtattgttctgtcaaaagattacttgaaattcccaggggctctgccaagtgccagattagatttgacccagccgtatctt |
25924386 |
T |
|
| Q |
621 |
cttaaggtgaaa |
632 |
Q |
| |
|
|||||||||||| |
|
|
| T |
25924387 |
cttaaggtgaaa |
25924398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 75; E-Value: 9e-34
Query Start/End: Original strand, 89 - 420
Target Start/End: Original strand, 24525354 - 24525714
Alignment:
| Q |
89 |
cagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgctggtcc |
188 |
Q |
| |
|
||||||||| ||||| ||| ||||||| | ||||| || |||||| | ||| ||| | | ||||| |||||||| || ||||||||||||| ||| || |
|
|
| T |
24525354 |
cagtggccacttcattcccatgttctaaactatccagagtttcgcaaattagatcgtctaaagttcattcttccctgctttaactcaaatcttctgctca |
24525453 |
T |
|
| Q |
189 |
atgttcttgagcaatgccacatgcttcaggttctcataattcagagcaacaaggtttgtttacttctcaagtttaattcaaacaatctttggtctgtcta |
288 |
Q |
| |
|
| || |||||| ||||||| |||||| | ||||||||||| || |||| ||||||||||| |||||| |||||||||| || |||||||||||||||||| |
|
|
| T |
24525454 |
acgtgcttgagaaatgccatatgcttaaagttctcataatccaaagcagcaaggtttgttgacttcttaagtttaatttaatcaatctttggtctgtcta |
24525553 |
T |
|
| Q |
289 |
--tatatacatgca----------------cacaaatatatttttgagtc-----------tcccttattgctgataggaggaaccaccaccattgagaa |
359 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||| |||||| ||| || ||||||||| |||||||||||||| |
|
|
| T |
24525554 |
tatatatgcatgcatatgtatctatccgcacacaaatatattattgagtcatggcatggtgtcccttgttgttggcaggaggaacaaccaccattgagaa |
24525653 |
T |
|
| Q |
360 |
catggcagccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattca |
420 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| || ||| |||| |||||||| |
|
|
| T |
24525654 |
catggcagccggagtcaacaagagtttctgaatgtctcaagtcccacctgacctatattca |
24525714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 83 - 289
Target Start/End: Original strand, 24489452 - 24489658
Alignment:
| Q |
83 |
tacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgc |
182 |
Q |
| |
|
|||| ||||||||| |||||||||||||| || || || | |||| ||| ||||||||||| | ||||| ||||| || | || |||||||||| | |
|
|
| T |
24489452 |
tacaagcagtggccgcttcatgcccctgttataaataattcaaaattccgcaatttacatcatctaaagttcattctccctttcttcaactcaaatcttc |
24489551 |
T |
|
| Q |
183 |
tggtccatgttcttgagcaatgccacatgcttcaggttctcataattcagagcaacaaggtttgtttacttctcaagtttaattcaaacaatctttggtc |
282 |
Q |
| |
|
|| || | || ||| || ||||||| ||||||| ||||||||||||||||| | ||||||||||| | |||||||||| |||| || |||| ||||||| |
|
|
| T |
24489552 |
tgctcaaagtgcttcagaaatgccatctgcttcaagttctcataattcagagtagcaaggtttgttgagttctcaagttcaattaaatcaatttttggtc |
24489651 |
T |
|
| Q |
283 |
tgtctat |
289 |
Q |
| |
|
| ||||| |
|
|
| T |
24489652 |
tatctat |
24489658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 50; E-Value: 7e-19
Query Start/End: Original strand, 80 - 298
Target Start/End: Original strand, 26038245 - 26038465
Alignment:
| Q |
80 |
gtatacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatc |
179 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||| | ||||||| ||||||||| |||| | ||| | ||||| | |||||| ||||||||||||| | |
|
|
| T |
26038245 |
gtatacatgcagtggccacttcaagtccctgttattaattatccagaatttcgctctttagaacatctaaagttcactcttccctgttttaactcaacta |
26038344 |
T |
|
| Q |
180 |
cgctggtccatgttcttgagcaatgccacatgcttcaggttctcataattcagagcaacaaggtttgtttac--ttctcaagtttaattcaaacaatctt |
277 |
Q |
| |
|
|||||| | || |||||| |||| || ||| |||||||||||||| ||| |||||||||||| || |||||||||||| || || ||||||| |
|
|
| T |
26038345 |
ttctggtcaacgtgcttgagaaatgtcatgaccttatagttctcataattcatagcgacaaggtttgttcacacttctcaagtttacttgaatcaatctt |
26038444 |
T |
|
| Q |
278 |
tggtctgtctatatatacatg |
298 |
Q |
| |
|
|||||||||||| ||| |||| |
|
|
| T |
26038445 |
tggtctgtctatgtatgcatg |
26038465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 83 - 266
Target Start/End: Original strand, 25923750 - 25923933
Alignment:
| Q |
83 |
tacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgc |
182 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||||||||||| ||||||||||| ||| ||||| | ||||| ||||| || || || ||||| |||| | |
|
|
| T |
25923750 |
tacaagcagtggacacttcatgcccctgttctagattatccagaatttcgccaattaaatcatataaagttcattctcccttgcttcaactcgaatcttc |
25923849 |
T |
|
| Q |
183 |
tggtccatgttcttgagcaatgccacatgcttcaggttctcataattcagagcaacaaggtttgtttacttctcaagtttaatt |
266 |
Q |
| |
|
| ||| ||| || | |||| | |||||| | ||||||||||||||||| |||||||||||| |||| |||| ||||||| |
|
|
| T |
25923850 |
ttgtcactgtgctccataaatgtgatatgcttaaatttctcataattcagagcgacaaggtttgttgacttttcaactttaatt |
25923933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 1273 - 1521
Target Start/End: Original strand, 30079184 - 30079433
Alignment:
| Q |
1273 |
ggcctgttgctggctatgtttggtggaattagtgggagtgtggagttttgtgggggtcggttttgctaatccggtgttctgttgatgtggagtggttaag |
1372 |
Q |
| |
|
||||| ||||||||| |||||| ||| |||||||||||||||||||| | ||||||||||||| |||| | | ||||||| |||||| |||||| |
|
|
| T |
30079184 |
ggcctcttgctggctttgtttgttggttttagtgggagtgtggagtttggcgggggtcggttttagtaatgggagggtctgttggcatggagttgttaag |
30079283 |
T |
|
| Q |
1373 |
gggaacatgttcgtgttggaagctgattttggctcttcgccatctttttccaaataattgttatttttgttatcttagtagttagtgtgttttattcaga |
1472 |
Q |
| |
|
||| || |||| |||| | ||| ||||||||||| | |||||| ||||| |||| |||| || |||||| || |||||| |||| ||||||||||| | |
|
|
| T |
30079284 |
gggcacctgttggtgtagaaaggtgattttggctttatgccatccttttctaaatgattgcgatctttgttgtcgtagtag-tagtttgttttattcaaa |
30079382 |
T |
|
| Q |
1473 |
tacgctctgaagttgactctt--aaatgtggagtactagagtggttttggc |
1521 |
Q |
| |
|
|| | | | |||||||| ||| | |||||||| || |||||| ||||||| |
|
|
| T |
30079383 |
tatgttttaaagttgacccttagagatgtggagcacaagagtgattttggc |
30079433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 24942539 - 24942643
Alignment:
| Q |
194 |
cttgagcaatgccacatgcttcaggttctcataattcagagcaacaaggtttgtttacttctcaagtttaattcaaacaatctttggtctgtctatatat |
293 |
Q |
| |
|
|||||| ||||||| |||||||| ||||| |||||||||||||| ||||||||| || || | ||||||||| || |||||||||||||| |||| ||| |
|
|
| T |
24942539 |
cttgagaaatgccatatgcttcaagttcttataattcagagcaataaggtttgtctagtttttgagtttaattgaatcaatctttggtctgcctatgtat |
24942638 |
T |
|
| Q |
294 |
acatg |
298 |
Q |
| |
|
|||| |
|
|
| T |
24942639 |
ccatg |
24942643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1594 - 1746
Target Start/End: Original strand, 30079514 - 30079666
Alignment:
| Q |
1594 |
caacatgatactgaacttgtatttttgtggaagctcattagtcgtggtgttcagttgtagaagtgtgt-tttttccttttcccactgtcaatgggatgag |
1692 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| |||| || |||| |||||| | | ||| || |||||| |||| ||||||| |||| ||| |
|
|
| T |
30079514 |
caacatgatattgaacttgtatttttttggaagctctttagacgcagtgtccagttgcata-gtgagtgtttttctttttttggctgtcaaggggaagag |
30079612 |
T |
|
| Q |
1693 |
cagtgcgggttgtgcaatagtaggtattggagtgtgttggtgtgtggcatggtg |
1746 |
Q |
| |
|
|||||| |||| |||| | ||||||||||||||| |||||| | ||||||||| |
|
|
| T |
30079613 |
cagtgctggttttgcattggtaggtattggagtgcattggtgcgaggcatggtg |
30079666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 20507136 - 20507241
Alignment:
| Q |
194 |
cttgagcaatgccacatgcttcaggttctcataattcagagcaacaaggtttgtttacttctcaagtttaattcaaacaatctttgg-tctgtctatata |
292 |
Q |
| |
|
|||||| ||||||| |||||| | ||||||||||||||||| | |||||||||| | |||||| ||| |||| || |||| ||||| ||||||||| || |
|
|
| T |
20507136 |
cttgagaaatgccatatgcttaaagttctcataattcagagtagcaaggtttgtagagttctcaggttaaattaaatcaatttttggttctgtctatgta |
20507235 |
T |
|
| Q |
293 |
tacatg |
298 |
Q |
| |
|
| |||| |
|
|
| T |
20507236 |
tgcatg |
20507241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1013 - 1058
Target Start/End: Complemental strand, 24539238 - 24539193
Alignment:
| Q |
1013 |
tttatgttggcatagcaatattttcaattcatggtatagtctgaga |
1058 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
24539238 |
tttatgttggcatagcaacattttcaattcattgtatagtttgaga |
24539193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 509
Target Start/End: Original strand, 4409987 - 4410070
Alignment:
| Q |
426 |
aagggtatcaaggacttgaagatgagctgacatttgctgaatatattttgcggaacggacttgttttgaagacaatgcttattt |
509 |
Q |
| |
|
|||| |||||||||||| ||||||| || ||||| ||| ||||||||||| || ||| ||| ||||||||||||| |||||| |
|
|
| T |
4409987 |
aaggctatcaaggacttccagatgagttgttatttgttgagtatattttgcgaaatggatttgctttgaagacaatggttattt |
4410070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 8e-62; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 8e-62
Query Start/End: Original strand, 111 - 625
Target Start/End: Original strand, 45793539 - 45794056
Alignment:
| Q |
111 |
ttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgctggtccatgttcttgagcaatgccacat |
210 |
Q |
| |
|
||||| |||||||| ||| || | ||||||||||| | ||||| ||| ||||||||||||||||||||| |||||||||| ||||| |||| ||||| |
|
|
| T |
45793539 |
ttctaaattatccttaatatcacaatttacatcatctaaagttcatttttccatgttttaactcaaatcttttggtccatgtgattgagaaatgacacat |
45793638 |
T |
|
| Q |
211 |
gcttcaggttctcataattcagagcaacaaggtttgtttacttctcaagtttaattcaaacaatctttggtctgtctatatatacatgc----------a |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||| | || |||| |||| |||| | ||||||||| ||| |||||||||||| | |
|
|
| T |
45793639 |
gattcaggttctcataattcagagcaacaagttttgttgaattttcaa-tttatttcagaaaatctttggcatgtttatatatacatgttttgatttgta |
45793737 |
T |
|
| Q |
301 |
cacaaatatatttttgagtctcccttattgctgataggaggaaccaccaccattgagaacatggcagccggagtcaacaacagtttctcaatgtctcaaa |
400 |
Q |
| |
|
|| ||||| |||| ||||| | |||| ||||| ||||||||||||||||| |||||||| | ||||||||||| ||| ||||||||||| |
|
|
| T |
45793738 |
cataaataaattt--gagtca----tggcgctggtaggatgaaccaccaccattgaggacatggcatgtgaagtcaacaacaattttcgaatgtctcaaa |
45793831 |
T |
|
| Q |
401 |
tctcacttgacatatattcatttagaagggtatcaaggacttgaagatgagctgacatttgctgaatatattttgcggaacggacttgttttgaagacaa |
500 |
Q |
| |
|
| |||||||| | | || | ||||||| |||||| |||||||||||||| ||| ||||||||||||||||||| ||||| | |||| |||||||| |
|
|
| T |
45793832 |
ttccacttgacctttgtttacatagaaggatatcaaagacttgaagatgagttgatatttgctgaatatattttgtggaacatgcaagtttggaagacaa |
45793931 |
T |
|
| Q |
501 |
tgcttatttttgttgatatttcaatggacaaaaaagacaaggactgctctctcaaaagattaactgacataccaaggggctctatcatgtgtcaacttga |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| ||||| ||| | ||||||||| || |||| |||||||||||||| |||||||||| | |
|
|
| T |
45793932 |
tgcttatttttgttgatatttcaatggacaaaatgggcaatgactgttcttttaaaagattatctaacatgataaggggctctatcaagtgtcaacttaa |
45794031 |
T |
|
| Q |
601 |
atttgacccagctgtatctccttaa |
625 |
Q |
| |
|
|||| ||| | ||||||| ||||| |
|
|
| T |
45794032 |
atttaaccatgatgtatcttcttaa |
45794056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 3e-55
Query Start/End: Original strand, 111 - 625
Target Start/End: Original strand, 45794807 - 45795325
Alignment:
| Q |
111 |
ttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgctggtccatgttcttgagcaatgccacat |
210 |
Q |
| |
|
||||| |||||||| ||| || | ||||| ||||| | ||||| ||| ||| |||||||||||||||| |||||||||| |||||| |||| ||||| |
|
|
| T |
45794807 |
ttctaaattatccttaatatcacaatttatatcatctaaagttcatttttcaatgttttaactcaaatattttggtccatgtgcttgagaaatgacacat |
45794906 |
T |
|
| Q |
211 |
gcttcaggttctcataattcagagcaacaaggtttgtttacttctcaagtttaattcaaacaatctttggtctgtctatatatacatgcac--------a |
302 |
Q |
| |
|
| |||| ||||||||||||| ||||||||| |||||| | || |||| |||| |||| | |||||||||| ||| |||||||||||| | |
|
|
| T |
45794907 |
gattcaaattctcataattcaaagcaacaagttttgttgaattttcaa-tttatttcagaaaatctttggtatgtttatatatacatgtttcgatttgta |
45795005 |
T |
|
| Q |
303 |
caaatatatttttgagtctcccttattgc-tgata--ggaggaaccaccaccattgagaacatggcagccggagtcaacaacagtttctcaatgtctcaa |
399 |
Q |
| |
|
|||| |||| |||||||| || || |||| ||| ||||||||||||||| | ||||| || | ||||||||||| ||| | |||||||||| |
|
|
| T |
45795006 |
caaaaatatatttgagtc------atggcatgatgtcggatgaaccaccaccattggggacatgacatgtgaagtcaacaacaatttttgaatgtctcaa |
45795099 |
T |
|
| Q |
400 |
atctcacttgacatatattcatttagaagggtatcaaggacttgaagatgagctgacatttgctgaatatattttgcggaacggacttgttttgaagaca |
499 |
Q |
| |
|
||| |||||||| ||| || | ||||||| |||||| ||||||||||||| ||| ||||||||||||||||||| ||||| | |||| ||||||| |
|
|
| T |
45795100 |
atcccacttgacctatgtttacatagaaggatatcaaagacttgaagatgaaatgatatttgctgaatatattttgtggaacatgcaagtttggaagaca |
45795199 |
T |
|
| Q |
500 |
atgcttatttttgttgatatttcaatggacaaaaaagacaaggactgctctctcaaaagattaactgacataccaaggggctctatcatgtgtcaacttg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || || ||||| |||||||| || |||| | |||||||||||||| |||||||||| |
|
|
| T |
45795200 |
atgcttatttttgttgatatttcaatggacaaaatggacaatgattgttctcttcaaagattatctaacatgctaaggggctctatcaagtgtcaactta |
45795299 |
T |
|
| Q |
600 |
aatttgacccagctgtatctccttaa |
625 |
Q |
| |
|
||||| |||| | ||||||| ||||| |
|
|
| T |
45795300 |
aatttaaccctgatgtatcttcttaa |
45795325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 4e-39
Query Start/End: Original strand, 339 - 577
Target Start/End: Complemental strand, 45795630 - 45795389
Alignment:
| Q |
339 |
aggaaccaccaccattgagaacatggcagccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattcatttagaagggtatcaagg |
438 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||||||||| |||| ||||||||||||| ||||||| ||| |||| ||||||| ||||||| |
|
|
| T |
45795630 |
aggaaccgccaccatcaagaacatggcagttagagtcaacaactgttttcaaatgtctcaaatcccacttgaactatgttcacatagaaggatatcaaga |
45795531 |
T |
|
| Q |
439 |
acttgaagatgagctgacatttgctgaatatattttgcggaacggacttgttttg---aagacaatgcttatttttgttgatatttcaatggacaaaaaa |
535 |
Q |
| |
|
||||||||||||| || ||||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
45795530 |
acttgaagatgaggtgtcatttgccgaatatattttgcggagcatacttgttttgaagaagacaatgcttatttttgttgataattcgatgaacaaaatg |
45795431 |
T |
|
| Q |
536 |
gacaaggactgctctctcaaaagattaactgacataccaagg |
577 |
Q |
| |
|
|||||| || ||||| |||||||||||| ||| ||||||| |
|
|
| T |
45795430 |
gacaagaaccattctctaaaaagattaactaacacaccaagg |
45795389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 339 - 575
Target Start/End: Complemental strand, 45794359 - 45794120
Alignment:
| Q |
339 |
aggaaccaccaccattgagaacatggcagccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattcatttagaagggtatcaagg |
438 |
Q |
| |
|
||||||| ||||||| |||||||| ||| ||||||||||| |||| ||||||||||||| |||||||| ||| |||| ||||||| ||||||| |
|
|
| T |
45794359 |
aggaaccgccaccatcaagaacatgacagttagagtcaacaaccgttttcgaatgtctcaaatcccacttgacctatgttcacatagaaggatatcaaga |
45794260 |
T |
|
| Q |
439 |
acttgaagatgagctgacatttgctgaatatattttgcggaacggacttgttttg---aagacaatgcttatttttgttgatatttcaatggacaaaaaa |
535 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||| ||| | |||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45794259 |
acttgaagatgatgtgtcatttgccgaatatattttggggagcatacttgttttgaagaagacaatgcttatttttgttgataattcaatggacaaaatg |
45794160 |
T |
|
| Q |
536 |
gacaaggactgctctctcaaaagattaactgacataccaa |
575 |
Q |
| |
|
|||||| || | ||| |||||||||||| ||| ||||| |
|
|
| T |
45794159 |
gacaagaaccattatcttaaaagattaactaacacaccaa |
45794120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 3e-27
Query Start/End: Original strand, 135 - 298
Target Start/End: Complemental strand, 45794613 - 45794450
Alignment:
| Q |
135 |
atttacatcatttgaagttaattcttccatgttttaactcaaatccgctggtccatgttcttgagcaatgccacatgcttcaggttctcataattcagag |
234 |
Q |
| |
|
||||||||| | ||||||| |||||| |||||| ||||| |||| || |||||||| ||||| |||| || ||| |||| ||||||||||||| ||| |
|
|
| T |
45794613 |
atttacatcgtatgaagttcattcttttatgtttcaactcgaatcttctagtccatgtgtttgagaaatgtcatatgtttcaagttctcataattctgag |
45794514 |
T |
|
| Q |
235 |
caacaaggtttgtttacttctcaagtttaattcaaacaatctttggtctgtctatatatacatg |
298 |
Q |
| |
|
||| | |||||||| |||| |||||||||||||||||||||||| |||||| || ||||||||| |
|
|
| T |
45794513 |
caatagggtttgttaacttttcaagtttaattcaaacaatctttagtctgtttagatatacatg |
45794450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 98 - 298
Target Start/End: Complemental strand, 45798799 - 45798599
Alignment:
| Q |
98 |
attcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgctggtccatgttcttg |
197 |
Q |
| |
|
||||||| |||||||||| ||||| |||||||| ||||||||| | ||||| | ||| ||| || ||| || || |||| || |||||||| ||| |
|
|
| T |
45798799 |
attcatgaccctgttctaaattataatgaatttcatgatttacatcgtatgaagctcattattctatctttcaattcgaatcttctagtccatgtgtttg |
45798700 |
T |
|
| Q |
198 |
agcaatgccacatgcttcaggttctcataattcagagcaacaaggtttgtttacttctcaagtttaattcaaacaatctttggtctgtctatatatacat |
297 |
Q |
| |
|
|| |||| ||||| |||| ||||||||||||| |||||| | |||||||| |||| |||||||||||||||| ||||||| || ||| || |||||||| |
|
|
| T |
45798699 |
agaaatgttacatgtttcaagttctcataattctgagcaatagggtttgttaacttttcaagtttaattcaaataatctttagtttgtttagatatacat |
45798600 |
T |
|
| Q |
298 |
g |
298 |
Q |
| |
|
| |
|
|
| T |
45798599 |
g |
45798599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-33
Query Start/End: Original strand, 357 - 629
Target Start/End: Original strand, 17773012 - 17773285
Alignment:
| Q |
357 |
gaacatggcagccggagtcaacaacagtttctcaatgtctcaaatctcacttgacatatattcatttagaagggtatcaaggacttgaag-atgagctga |
455 |
Q |
| |
|
|||||||| |||| ||||||||| |||| || |||||||| |||| | ||||||||||||| ||||||| ||||||||| |||||| | || ||| |
|
|
| T |
17773012 |
gaacatgggagccaaagtcaacaatagttcctaaatgtctcgaatccaatctgacatatattcacatagaaggatatcaaggatttgaaggaggacctgg |
17773111 |
T |
|
| Q |
456 |
catttgctgaatatattttgcggaacggacttgttttgaagacaatgcttatttttgttgatatttcaatggacaaaaaagacaaggactgctctctcaa |
555 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| | ||||||||||| ||| | |||| ||||||||| || ||||| | | || ||||| |
|
|
| T |
17773112 |
catttgctgaatatatcttgcgtaacggacttgttttgcacacaatgcttatatttttcgatacttcaatggatctaactaacaagtatcgttccctcaa |
17773211 |
T |
|
| Q |
556 |
aagattaactgacataccaaggggctctatcatgtgtcaacttgaatttgacccagctgtatctccttaaggtg |
629 |
Q |
| |
|
||||||||| || ||||||||||||||| ||| || |||||| ||||||| || |||| ||||||||||||| |
|
|
| T |
17773212 |
aagattaaccgatataccaaggggctctgtcacatgccaacttaaatttgattcaactgtgtctccttaaggtg |
17773285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 261
Target Start/End: Original strand, 17772773 - 17772923
Alignment:
| Q |
111 |
ttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgctggtccatgttcttgagcaatgccacat |
210 |
Q |
| |
|
||||| ||||||| ||||||||| ||||| ||||| | ||||| |||||||| || || ||||| |||| ||| | || |||||| |||||||||| |
|
|
| T |
17772773 |
ttctaaattatccagaatttcgcaatttaaatcatctaaagttcattcttccctgcttcaactcgaatcttctgctgggcgtgcttgagaaatgccacat |
17772872 |
T |
|
| Q |
211 |
gcttcaggttctcataattcagagcaacaaggtttgtttacttctcaagtt |
261 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||| | ||||| |||| |
|
|
| T |
17772873 |
gcttcaagttctcctaattcagagttgcaaggtttgttgagttctcgagtt |
17772923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1141 - 1206
Target Start/End: Complemental strand, 37406277 - 37406211
Alignment:
| Q |
1141 |
ttatagtcatacctgtgaggactcctatgcactcatttggaacctt-aaattcttcatctgaagctc |
1206 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| | |||||||| ||| |||||||| ||| ||||||| |
|
|
| T |
37406277 |
ttatagtcatacctgtaaggactcttatgcattgatttggaaacttaaaattcttaatcagaagctc |
37406211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 431 - 508
Target Start/End: Complemental strand, 46839809 - 46839732
Alignment:
| Q |
431 |
tatcaaggacttgaagatgagctgacatttgctgaatatattttgcggaacggacttgttttgaagacaatgcttatt |
508 |
Q |
| |
|
|||||||||||| ||||||||| ||||| ||| ||||||||| || ||||||||||||||||||||| ||||| |
|
|
| T |
46839809 |
tatcaaggacttccagatgagctattatttgttgagtatattttgaaaaaaggacttgttttgaagacaatgattatt |
46839732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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