View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18095_low_10 (Length: 324)

Name: NF18095_low_10
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18095_low_10
NF18095_low_10
[»] chr7 (12 HSPs)
chr7 (65-246)||(29258386-29258567)
chr7 (25-251)||(19436666-19436892)
chr7 (25-253)||(29833942-29834170)
chr7 (27-105)||(29243380-29243455)
chr7 (27-105)||(45972423-45972500)
chr7 (164-249)||(45972278-45972363)
chr7 (164-249)||(29243235-29243320)
chr7 (164-249)||(47327797-47327882)
chr7 (180-251)||(34093971-34094042)
chr7 (180-250)||(6442491-6442561)
chr7 (21-90)||(6442640-6442709)
chr7 (21-90)||(34094121-34094190)
[»] chr6 (3 HSPs)
chr6 (1-225)||(33694801-33695024)
chr6 (27-189)||(28138039-28138200)
chr6 (25-189)||(12938698-12938862)
[»] chr3 (15 HSPs)
chr3 (19-251)||(12938395-12938627)
chr3 (25-249)||(50650389-50650613)
chr3 (22-247)||(31658814-31659038)
chr3 (30-255)||(33216657-33216882)
chr3 (159-251)||(53282146-53282238)
chr3 (37-252)||(29833268-29833483)
chr3 (159-262)||(29703668-29703771)
chr3 (27-105)||(39833230-39833307)
chr3 (164-250)||(39833367-39833453)
chr3 (164-246)||(5232804-5232886)
chr3 (159-249)||(36950290-36950380)
chr3 (164-249)||(20104177-20104262)
chr3 (201-255)||(50360241-50360295)
chr3 (33-105)||(29703541-29703612)
chr3 (33-105)||(36950163-36950234)
[»] chr5 (8 HSPs)
chr5 (19-249)||(41413434-41413664)
chr5 (19-249)||(1828408-1828638)
chr5 (19-249)||(40313873-40314103)
chr5 (25-250)||(30624859-30625084)
chr5 (30-250)||(31482071-31482291)
chr5 (164-249)||(24788460-24788545)
chr5 (159-258)||(39884541-39884640)
chr5 (27-105)||(24788323-24788400)
[»] chr4 (16 HSPs)
chr4 (25-250)||(27292941-27293166)
chr4 (27-263)||(42976313-42976548)
chr4 (25-250)||(4919010-4919234)
chr4 (164-258)||(20133256-20133350)
chr4 (27-105)||(20133410-20133487)
chr4 (164-250)||(24228280-24228366)
chr4 (180-252)||(47031600-47031672)
chr4 (192-251)||(42069199-42069258)
chr4 (167-250)||(55919526-55919609)
chr4 (27-105)||(55919386-55919463)
chr4 (21-90)||(45989603-45989672)
chr4 (21-90)||(42069039-42069108)
chr4 (180-249)||(45989751-45989820)
chr4 (21-67)||(47031452-47031498)
chr4 (33-105)||(15531216-15531287)
chr4 (27-67)||(28679545-28679585)
[»] chr2 (15 HSPs)
chr2 (25-249)||(14096252-14096476)
chr2 (159-251)||(7089077-7089169)
chr2 (27-123)||(18977110-18977205)
chr2 (164-251)||(37078800-37078887)
chr2 (27-105)||(15330735-15330812)
chr2 (27-105)||(37261696-37261773)
chr2 (164-251)||(18977222-18977309)
chr2 (27-105)||(14810114-14810191)
chr2 (27-105)||(16429864-16429941)
chr2 (164-250)||(17690458-17690544)
chr2 (27-105)||(17690604-17690681)
chr2 (164-250)||(14810251-14810336)
chr2 (164-251)||(15330587-15330675)
chr2 (164-244)||(16429724-16429804)
chr2 (159-220)||(33755202-33755263)
[»] chr1 (8 HSPs)
chr1 (8-248)||(39241555-39241792)
chr1 (26-251)||(52385812-52386037)
chr1 (25-249)||(27286160-27286384)
chr1 (27-105)||(12981521-12981598)
chr1 (27-105)||(45348267-45348344)
chr1 (164-249)||(12981376-12981461)
chr1 (164-251)||(45348404-45348491)
chr1 (28-90)||(45325635-45325697)
[»] chr8 (8 HSPs)
chr8 (30-249)||(13802682-13802901)
chr8 (27-105)||(30945452-30945527)
chr8 (164-249)||(531539-531624)
chr8 (27-105)||(531684-531761)
chr8 (159-252)||(3879599-3879692)
chr8 (33-105)||(3879472-3879543)
chr8 (30-90)||(23614278-23614338)
chr8 (164-251)||(30945587-30945677)
[»] scaffold0166 (2 HSPs)
scaffold0166 (164-249)||(30843-30928)
scaffold0166 (27-105)||(30706-30783)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 65 - 246
Target Start/End: Complemental strand, 29258567 - 29258386
Alignment:
Q  65 agatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagacatggaacaagtgatccatattagaatttgtccattatccg 164  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |    
T  29258567 agatgccaagtaaatctaaccgttaaagattatgaaataaacttgtccacggtggaacacatggagcaagtgatccatgttagaatttgtccattatctg 29258468  T
Q  165 acgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagct 246  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  29258467 acgtgtcatcacttgaaatctgattggcccattcaaacaactgcatcgaagaagtcaattgcccgacttcttcatagaagct 29258386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 19436892 - 19436666
Alignment:
Q  25 ataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagac 124  Q
    ||||||||||||||||||| ||||||||||||||||| |||||  ||||  ||||| ||| ||||| |||| ||||||||||||||| | ||||||| |     
T  19436892 ataagaaaaatcatgtgtatagggtgtaccacaataacatagagaccaaacaaatctaactgttaa-gatcttgaaataaacttgtctatggtggaacat 19436794  T
Q  125 atggaacaagtgatccatattagaatttgt-ccattatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaat 223  Q
    ||| |||||||||||||||||||||||||| |||  ||  ||||| ||||  |||||||| ||||| ||  | | |||||||| || |||| ||||| ||    
T  19436793 atgaaacaagtgatccatattagaatttgtcccaacatatgacgtatcatggcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtctat 19436694  T
Q  224 tgcccgacatcttcatagaagctccctt 251  Q
    | ||| || |||||||| ||||||||||    
T  19436693 tccccaacttcttcataaaagctccctt 19436666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 29833942 - 29834170
Alignment:
Q  25 ataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagac 124  Q
    ||||| ||||||||||| ||||||| ||||||||||| |||||  ||||  ||||| ||| ||||| |||| ||||||||||||||| | ||||||| |     
T  29833942 ataagtaaaatcatgtgcagagggtttaccacaataacatagagaccaaacaaatctaactgttaa-gatcttgaaataaacttgtctatggtggaacat 29834040  T
Q  125 atggaacaagtgatccatattagaatttgtcc-attatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaat 223  Q
    ||| | |||||||||||||||||| ||||||| |  ||| ||| ||||||  |||||||| ||||| ||  | | ||||||||  | | || ||||||||    
T  29834041 atgaagcaagtgatccatattagagtttgtcccaacatctgacatgtcatggcttgaaatctgattggctgaattaaacgactttaccaaaaaagtcaat 29834140  T
Q  224 tgcccgacatcttcatagaagctcccttaa 253  Q
    | |||||| ||||| |||||||||||||||    
T  29834141 tccccgacttcttcgtagaagctcccttaa 29834170  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 29243455 - 29243380
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||||| ||||  |||||||||| |||| || ||||||||||||||||    
T  29243455 aagaaaaatcatgtgtagatggtgtaccacaataatagagat--caagtaaatctaaccatt-aagatcatgaaataaa 29243380  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 45972500 - 45972423
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   |||||||||| |||| ||||| |||||||||||||    
T  45972500 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaa-atcatgaaataaa 45972423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 45972363 - 45972278
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccc 249  Q
    |||||||||||| || |||| ||||| |||||||||||||||| || ||||||||||| || || ||| || ||||||||||||||    
T  45972363 gacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 45972278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 29243320 - 29243235
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccc 249  Q
    |||||||||||| || |||| |||||  ||||||||||||||| || ||||||||||| || || ||| || ||||||||||||||    
T  29243320 gacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 29243235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 47327882 - 47327797
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccc 249  Q
    ||||||||||| ||| |||| ||||| ||||||||| |||||| || ||||||||||| || || ||| ||||| |||||||||||    
T  47327882 gacgtgtcatcgcttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagctccc 47327797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 34094042 - 34093971
Alignment:
Q  180 aaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccctt 251  Q
    |||| ||||| ||||||||||||||||||| ||||||||||| ||  | ||| ||||| |||||||||||||    
T  34094042 aaatctgattggcccattcaaacgactgcaccgaagaagtcatttttctgacttcttcgtagaagctccctt 34093971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 6442561 - 6442491
Alignment:
Q  180 aaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccct 250  Q
    |||| ||||| ||||||||||||||||||| | ||||||||| || || ||| ||||| ||||||||||||    
T  6442561 aaatctgattggcccattcaaacgactgcaccaaagaagtcattttcctgacttcttcgtagaagctccct 6442491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 6442709 - 6442640
Alignment:
Q  21 aattataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaa 90  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| |||||  |||| |||||| ||| |||||    
T  6442709 aattagaagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaa 6442640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 34094190 - 34094121
Alignment:
Q  21 aattataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaa 90  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| |||||   ||| |||||| |||||||||    
T  34094190 aattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaa 34094121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 33695024 - 33694801
Alignment:
Q  1 taaacaagagagagaaacggaattataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaa 100  Q
    |||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||| ||||| |||||||||    
T  33695024 taaagaagagagagaaatggaattataagaaaaatcatatgtagagggtgtaccacaataatatagaggccaaataaatctaactgttaa-gatcatgaa 33694926  T
Q  101 ataaacttgtccacggtggaagacatggaacaagtgatccatattagaatttgtccattatccgacgtgtcatcacttgaaatttgattagcccattcaa 200  Q
    ||||| ||||| | | ||||| | ||||| |||||||||||||||| ||||| |||||||||  |||||||||||||| |||| ||||| | ||||||||    
T  33694925 ataaatttgtctatgatggaacatatggagcaagtgatccatattaaaatttttccattatctaacgtgtcatcacttaaaatctgattggtccattcaa 33694826  T
Q  201 acgactgcatcgaagaagtcaattg 225  Q
    |||||| || |||| ||||||||||    
T  33694825 acgacttcaccgaaaaagtcaattg 33694801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 28138039 - 28138200
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagacat 126  Q
    ||||||||||||||||||| |  ||||||||||||||||||  ||||||||||| |||| |||| |||||||||||||||||||||| | ||| | | ||    
T  28138039 aagaaaaatcatgtgtagatgacgtaccacaataatatagagaccaagtaaatctaacctttaa-gatcatgaaataaacttgtccatgatgggacatat 28138137  T
Q  127 ggaacaagtgatccatattagaatttgtccattatccgacgtgtcatcacttgaaatttgatt 189  Q
    ||| |||||| ||||||||| |||||||||   ||| |||||||||| |||||||||||||||    
T  28138138 ggagcaagtggtccatattaaaatttgtcctacatctgacgtgtcatgacttgaaatttgatt 28138200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 12938862 - 12938698
Alignment:
Q  25 ataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagac 124  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||  ||||| ||||||| |||||  ||||||||||||||| | ||||||| |     
T  12938862 ataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgtt-aagattttgaaataaacttgtctatggtggaacat 12938764  T
Q  125 atggaacaagtgatccatattagaatttgt-ccattatccgacgtgtcatcacttgaaatttgatt 189  Q
    ||| | |||||||||||||||| ||||||| |||  ||| ||||||||||| ||| |||| |||||    
T  12938763 atgaagcaagtgatccatattaaaatttgtcccaacatctgacgtgtcatcgcttaaaatctgatt 12938698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 12938627 - 12938395
Alignment:
Q  19 ggaattataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtg 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||||||| | ||||||| |||||| ||||||||||||||||||||||    
T  12938627 ggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgtt-aagatcttgaaataaacttgtccacggtg 12938529  T
Q  119 gaagacatggaacaagtgatccatattagaatttgtcc-attatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaa 217  Q
    ||| | ||| | |||||||||||||||| ||||||||| |  ||| ||||||||||  |||||||| ||||| | |||||||||||||| || |||||||    
T  12938528 gaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaa 12938429  T
Q  218 gtcaattgcccgacatcttcatagaagctccctt 251  Q
    |||| || |||||| || ||||||||||||||||    
T  12938428 gtcatttacccgacttcatcatagaagctccctt 12938395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 25 - 249
Target Start/End: Original strand, 50650389 - 50650613
Alignment:
Q  25 ataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagac 124  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||  ||||| ||||||||| |||| ||||||||||||||| | ||||||| |     
T  50650389 ataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaa-gatcttgaaataaacttgtctatggtggaacat 50650487  T
Q  125 atggaacaagtgatccatattagaatttgt-ccattatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaat 223  Q
    ||| |||||||||||||||||||||||||| |||  ||| ||||||||||  |||||||| ||||| ||  | | ||||||||  | |||| ||||||||    
T  50650488 atgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaacgactttaccgaaaaagtcaat 50650587  T
Q  224 tgcccgacatcttcatagaagctccc 249  Q
    | |||||| |||||||||||||||||    
T  50650588 tccccgacttcttcatagaagctccc 50650613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 31658814 - 31659038
Alignment:
Q  22 attataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaa 121  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||||  ||||||||||| ||||||| |||||||| ||| ||||||||| | ||||| |    
T  31658814 attagaagaaaaatcatgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgtt-aagatcataaaagaaacttgtctatggtggga 31658912  T
Q  122 gacatggaacaagtgatccatattagaatttgtccattatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtca 221  Q
       ||||| |||||||||||||||||||||| |||   ||  || |||||||| |||||||| ||||| |   | | ||||||||||| |||||||||||    
T  31658913 cttatggagcaagtgatccatattagaatttatcctacatgtgatgtgtcatctcttgaaatctgattggttgaattaaacgactgcaccgaagaagtca 31659012  T
Q  222 attgcccgacatcttcatagaagctc 247  Q
    ||||  | || | |||||||||||||    
T  31659013 attgttcaactttttcatagaagctc 31659038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 33216657 - 33216882
Alignment:
Q  30 aaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagacatgga 129  Q
    |||||| ||| ||||| | ||||||| ||||  ||||| |||||  ||||| |||| |||| ||||||||| ||||  |||| | ||||||| | |||||    
T  33216657 aaaaattatgcgtagatgctgtaccataataccatagaggccaaacaaatctaaccattaa-gatcatgaagtaaatctgtctatggtggaacatatgga 33216755  T
Q  130 acaagtgatccatattagaatttgtccatta--tccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcc 227  Q
     |||||||||||||||| |||||||| ||||  |  ||||||||||||||| |||| ||||| || ||||||||||||| || ||||||||||| ||       
T  33216756 gcaagtgatccatattataatttgtc-attacttaggacgtgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaagaagtcattttaa 33216854  T
Q  228 cgacatcttcatagaagctcccttaatt 255  Q
     ||| || || |||||||||||||||||    
T  33216855 tgacttcatcgtagaagctcccttaatt 33216882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 53282238 - 53282146
Alignment:
Q  159 tatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccctt 251  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||||| || ||||||||||| ||  | ||| |||||||||||||||||||    
T  53282238 tatctgacgtgtcatcacttgaaatctgattggcccattcaaacgacttcaccgaagaagtcatttttctgacttcttcatagaagctccctt 53282146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 252
Target Start/End: Complemental strand, 29833483 - 29833268
Alignment:
Q  37 atgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagacatggaacaagtg 136  Q
    ||||| ||| ||||||||| ||||  |||||  ||||  ||||| |||| |||| |||||| || ||||  |||| | ||||||| | ||||| ||||||    
T  29833483 atgtgaagatggtgtaccataataccatagaaaccaaacaaatctaaccattaa-gatcatcaagtaaatctgtctatggtggaacatatggagcaagtg 29833385  T
Q  137 atccatattagaatttgtccatta--tccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatc 234  Q
    |||||||||| ||||||||| |||  || ||||||||||||||| |||| ||||| |  ||||||||||||| || | ||||||||| ||  | ||| ||    
T  29833384 atccatattataatttgtcc-ttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgacttcaccaaagaagtcattttactgacttc 29833286  T
Q  235 ttcatagaagctccctta 252  Q
    ||| ||||||||||||||    
T  29833285 ttcgtagaagctccctta 29833268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 262
Target Start/End: Original strand, 29703668 - 29703771
Alignment:
Q  159 tatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctcccttaatttaa 258  Q
    ||||||||||||||||||||||||| ||||| | |||||||||||||| || |||| |||||| ||  | ||| ||| | |||||||||||||| || ||    
T  29703668 tatccgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatttttctgacttctccgtagaagctcccttacttaaa 29703767  T
Q  259 taga 262  Q
    ||||    
T  29703768 taga 29703771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 39833230 - 39833307
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   |||||||||| |||| ||||| |||||||||||||    
T  39833230 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaa-atcatgaaataaa 39833307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 39833367 - 39833453
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccct 250  Q
    |||||||||||| || |||| ||||| |||||||||||||||| || ||||||||||| || || ||| || |||||||||||||||    
T  39833367 gacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccct 39833453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 5232886 - 5232804
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagct 246  Q
    ||||||||||||||| |||| ||||| ||||||||| |||||| || ||||||||||| || || ||| ||||| ||||||||    
T  5232886 gacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagct 5232804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 36950290 - 36950380
Alignment:
Q  159 tatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccc 249  Q
    |||| |||||||||||||||||||| | ||| |||||||||||||||| || |||| |||||  ||  | ||| |||||||||||||||||    
T  36950290 tatctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcatagaagctccc 36950380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 20104262 - 20104177
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccc 249  Q
    ||||||||||||||| |||| ||||| ||| |||||||||| | || |||| |||||| || || ||| ||||| |||||||||||    
T  20104262 gacgtgtcatcacttaaaatctgattggcctattcaaacgatttcaccgaaaaagtcattttcctgacttcttcgtagaagctccc 20104177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 50360241 - 50360295
Alignment:
Q  201 acgactgcatcgaagaagtcaattgcccgacatcttcatagaagctcccttaatt 255  Q
    |||||| || |||| ||||||||| |||||| ||||| |||||||||||||||||    
T  50360241 acgacttcaccgaaaaagtcaattccccgacttcttcgtagaagctcccttaatt 50360295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 29703541 - 29703612
Alignment:
Q  33 aatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    |||||||||||||  || ||||||||||| |||||  | ||||||||| |||| || ||||||||||||||||    
T  29703541 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccatt-aagatcatgaaataaa 29703612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 36950163 - 36950234
Alignment:
Q  33 aatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    |||||||||||||   | ||||||||||| |||||  ||||||||||| |||| || ||||||||||||||||    
T  36950163 aatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccatt-aagatcatgaaataaa 36950234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 41413434 - 41413664
Alignment:
Q  19 ggaattataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtg 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||||||| | ||||||| |||||| ||||||||||||||||||||||    
T  41413434 ggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgtt-aagatcttgaaataaacttgtccacggtg 41413532  T
Q  119 gaagacatggaacaagtgatccatattagaatttgtcc-attatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaa 217  Q
    ||| | ||| | |||||||||||||||| ||||||||| |  ||| ||||||||||  |||||||| ||||| | |||||||||||||| || |||||||    
T  41413533 gaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaa 41413632  T
Q  218 gtcaattgcccgacatcttcatagaagctccc 249  Q
    |||| || |||||| || ||||||||||||||    
T  41413633 gtcatttacccgacttcatcatagaagctccc 41413664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 1828638 - 1828408
Alignment:
Q  19 ggaattataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtg 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||||||| | ||||||| |||||| ||||||||||||||||||||||    
T  1828638 ggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgtt-aagatcttgaaataaacttgtccacggtg 1828540  T
Q  119 gaagacatggaacaagtgatccatattagaatttgtc-cattatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaa 217  Q
    ||| | ||| | |||||||||||||||| ||||||||  |  ||| ||||||||||  |||||||| ||||| | |||||||||||||| || |||||||    
T  1828539 gaacatatgaagcaagtgatccatattataatttgtcataacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaa 1828440  T
Q  218 gtcaattgcccgacatcttcatagaagctccc 249  Q
    |||| || |||||| || ||||||||||||||    
T  1828439 gtcatttacccgacttcatcatagaagctccc 1828408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 40314103 - 40313873
Alignment:
Q  19 ggaattataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtg 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||||||| | ||||||| |||||| ||||||||||||||||||||||    
T  40314103 ggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgtt-aagatcttgaaataaacttgtccacggtg 40314005  T
Q  119 gaagacatggaacaagtgatccatattagaatttgtcc-attatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaa 217  Q
    ||| | ||| | |||||||||||||||  ||||||||| |  ||| ||||||||||  |||||||| ||||| | |||||||||||||| || |||||||    
T  40314004 gaacatatgaagcaagtgatccatattgtaatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaa 40313905  T
Q  218 gtcaattgcccgacatcttcatagaagctccc 249  Q
    |||| || |||||| || ||||||||||||||    
T  40313904 gtcatttacccgacttcatcatagaagctccc 40313873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 30625084 - 30624859
Alignment:
Q  25 ataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagac 124  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||  ||||| |||||||||| ||  ||||||||||||||| | ||||||| |     
T  30625084 ataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaaa-attttgaaataaacttgtctatggtggaacat 30624986  T
Q  125 atggaacaagtgatccatattagaatttgt-ccattatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaat 223  Q
    ||| | |||||||||||||||| ||||| | |||  ||| |||||||||| ||||||||| ||||| |   | | |||||||| ||   || ||||||||    
T  30624985 atgaagcaagtgatccatattaaaatttatcccaacatctgacgtgtcatgacttgaaatctgattggttgaattaaacgacttcactaaaaaagtcaat 30624886  T
Q  224 tgcccgacatcttcatagaagctccct 250  Q
    | | |||| ||||||||||||||||||    
T  30624885 ttctcgacttcttcatagaagctccct 30624859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 31482071 - 31482291
Alignment:
Q  30 aaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagacatgga 129  Q
    |||||| ||||||||| ||||||||| ||||  |||||  ||||  ||||| |||| |||| ||||||||| ||||  |||| | ||||||| | |||||    
T  31482071 aaaaattatgtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaa-gatcatgaagtaaatctgtctatggtggaacatatgga 31482169  T
Q  130 acaagtgatccatattagaatttgtccatta--tccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcc 227  Q
     |||||||||||||||| ||||||||| |||  || || |||||||||||| |||||||||| || |||||||||||||  | ||||||||||| ||  |    
T  31482170 gcaagtgatccatattataatttgtcc-ttacttctgaagtgtcatcacttaaaatttgattggctcattcaaacgactttaccgaagaagtcattttac 31482268  T
Q  228 cgacatcttcatagaagctccct 250  Q
     ||| ||||| ||||||||||||    
T  31482269 tgacttcttcgtagaagctccct 31482291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 24788460 - 24788545
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccc 249  Q
    |||||||||||| || |||| ||||| |||||||||||||||| || ||||||||||| || || ||| || ||||||||||||||    
T  24788460 gacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 24788545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 39884640 - 39884541
Alignment:
Q  159 tatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctcccttaatttaa 258  Q
    |||| |||||||||||||||||||| ||||| | |||||||||||||| || |||| |||||| ||  | ||| ||| | ||||| ||||||||||||||    
T  39884640 tatctgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatttttctgacttctccgtagaaactcccttaatttaa 39884541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 24788323 - 24788400
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   |||||||||| |||| ||||| ||||| |||||||    
T  24788323 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaa-atcataaaataaa 24788400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 27293166 - 27292941
Alignment:
Q  25 ataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagac 124  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||  ||||| ||||||||| |||| ||||||||||||||| | ||||||| |     
T  27293166 ataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaa-gatcttgaaataaacttgtctatggtggaacat 27293068  T
Q  125 atggaacaagtgatccatattagaatttgtcc-attatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaat 223  Q
    ||| |||||||||||||||||||||||||||| |  ||  ||||||||||  |||||||| ||||| ||  | | |||||||| || |||| ||||||||    
T  27293067 atgaaacaagtgatccatattagaatttgtcccaacatatgacgtgtcatggcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaat 27292968  T
Q  224 tgcccgacatcttcatagaagctccct 250  Q
    | |||||| ||||||||||||||||||    
T  27292967 tccccgacttcttcatagaagctccct 27292941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 263
Target Start/End: Complemental strand, 42976548 - 42976313
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagacat 126  Q
    ||||||||||||||||||| ||||||||||| ||| |||||  ||||||||||| ||||||| |||||||| ||| ||||||||| | ||||| |   ||    
T  42976548 aagaaaaatcatgtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgtt-aagatcataaaagaaacttgtctatggtgggacttat 42976450  T
Q  127 ggaacaagtgatccatattagaatttgtccattatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgc 226  Q
    ||| |||||||||||||||| ||||| | |   ||  ||||||||||| |||||||| ||||| |   | | |||||||||||||||||||||||||||     
T  42976449 ggagcaagtgatccatattaaaatttattctacatgtgacgtgtcatctcttgaaatctgattggttgaattaaacgactgcatcgaagaagtcaattgt 42976350  T
Q  227 ccgacatcttcatagaagctcccttaatttaatagac 263  Q
    ||||| |||||||||||||||||| || |||| ||||    
T  42976349 ccgacttcttcatagaagctccctaaacttaaaagac 42976313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 4919234 - 4919010
Alignment:
Q  25 ataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagac 124  Q
    |||||||||||||||||||||| |||||||||||||  |||||  ||||  ||||| |||| |||| |||| ||||||||||||||| | ||||||| |     
T  4919234 ataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaaccattaa-gatcttgaaataaacttgtctatggtggaacat 4919136  T
Q  125 atggaacaagtgatccatattagaatttgt-ccattatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaat 223  Q
    ||| |||||||||||||||||||||||||| |||  ||| ||||||||||  |||||||| ||||| ||  | |  ||||||| || |||| ||||||||    
T  4919135 atgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaat-taacgacttcaccgaaaaagtcaat 4919037  T
Q  224 tgcccgacatcttcatagaagctccct 250  Q
    | |||||| ||||||||||||||||||    
T  4919036 tccccgacttcttcatagaagctccct 4919010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 20133350 - 20133256
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctcccttaatttaa 258  Q
    |||||||||||| || |||| ||||| |||||||||||||||| || ||||||||||| || || ||| || ||||||||||||||||| |||||    
T  20133350 gacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctcccttattttaa 20133256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 20133487 - 20133410
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   |||||||||| |||| ||||| |||||||||||||    
T  20133487 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaa-atcatgaaataaa 20133410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 24228280 - 24228366
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccct 250  Q
    ||||||||||  |||||||| ||||| | |||||||||||||| || ||||||||||| || |||||| || |||||||||||||||    
T  24228280 gacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccct 24228366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 47031600 - 47031672
Alignment:
Q  180 aaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccctta 252  Q
    |||| ||||| ||||||||||||||||||| ||||||||||| || || ||| ||||| ||||||||||||||    
T  47031600 aaatctgattggcccattcaaacgactgcaccgaagaagtcattttcctgacttcttcgtagaagctccctta 47031672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 42069199 - 42069258
Alignment:
Q  192 cccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccctt 251  Q
    |||||||||||||||||| ||||||||||| || || ||| |||||||||||||||||||    
T  42069199 cccattcaaacgactgcaccgaagaagtcattttcctgacttcttcatagaagctccctt 42069258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 55919526 - 55919609
Alignment:
Q  167 gtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccct 250  Q
    ||||||||| || |||| ||||| |||||||||||||||| || ||||||||||| || || ||| || |||||||||||||||    
T  55919526 gtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccct 55919609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 55919386 - 55919463
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   |||||||||| |||  ||||| |||||||||||||    
T  55919386 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaa-atcatgaaataaa 55919463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 45989603 - 45989672
Alignment:
Q  21 aattataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaa 90  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| |||||  |||| |||||| |||||||||    
T  45989603 aattagaagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaa 45989672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 42069039 - 42069108
Alignment:
Q  21 aattataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaa 90  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| |||||   ||| |||||| |||||||||    
T  42069039 aattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaa 42069108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 45989751 - 45989820
Alignment:
Q  180 aaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccc 249  Q
    |||| ||||| ||||||||||||||||||| | ||||||||| || || ||| ||||| |||||||||||    
T  45989751 aaatctgattggcccattcaaacgactgcaccaaagaagtcattttcctgacttcttcgtagaagctccc 45989820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 47031452 - 47031498
Alignment:
Q  21 aattataagaaaaatcatgtgtagagggtgtaccacaataatataga 67  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| |||||    
T  47031452 aattagaagaaaaatcatgtgtagatggtataccacaataacataga 47031498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 15531216 - 15531287
Alignment:
Q  33 aatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    |||||||||||||  || ||||||||||| |||||  | ||||||||| |||| || ||||||||||||||||    
T  15531216 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccatt-aagatcatgaaataaa 15531287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 28679585 - 28679545
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatataga 67  Q
    ||||||||||||||||||| ||| ||||||||||| |||||    
T  28679585 aagaaaaatcatgtgtagatggtataccacaataacataga 28679545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 14096476 - 14096252
Alignment:
Q  25 ataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagac 124  Q
    |||||||||||||||||||||| |||||||||||||  |||||  ||||  ||||| ||| ||||| |||| ||||||||||||||| | ||||||| |     
T  14096476 ataagaaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacggttaa-gatcttgaaataaacttgtctatggtggaacat 14096378  T
Q  125 atggaacaagtgatccatattagaatttgt-ccattatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaat 223  Q
    ||| |||||||||||||||||||||||||| |||  ||| ||||||||||  |||||||| ||||| ||  | | |||||||| || |||| ||||||||    
T  14096377 atgaaacaagtgatccatattagaatttgtcccaacatctgacgtgtcatgtcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaat 14096278  T
Q  224 tgcccgacatcttcatagaagctccc 249  Q
    | |||||| |||||||||||||||||    
T  14096277 tccccgacttcttcatagaagctccc 14096252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 7089169 - 7089077
Alignment:
Q  159 tatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccctt 251  Q
    |||| |||||||||||||||||||| | ||| |||||||||||||||| ||||||| |||||  ||  | ||| |||||||||||||||||||    
T  7089169 tatctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcatcgaaaaagtcgtttttctgacttcttcatagaagctccctt 7089077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 18977110 - 18977205
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaaga 123  Q
    ||||||| | ||||||||| ||||||||||||||| |||||  | ||||||||| ||| ||| |||||||||||||||||||||||| |||| ||||    
T  18977110 aagaaaagttatgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgtt-aagatcatgaaataaacttgtccatggtgaaaga 18977205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 37078887 - 37078800
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccctt 251  Q
    ||||||||||||||| |||| ||||| ||||||||| |||||| || ||||||||||| || || ||| ||||| |||||||||||||    
T  37078887 gacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagctccctt 37078800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 15330812 - 15330735
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   |||||||||| |||| ||||| |||||||||||||    
T  15330812 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaa-atcatgaaataaa 15330735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 37261696 - 37261773
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   |||||||||| |||| ||||| |||||||||||||    
T  37261696 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaa-atcatgaaataaa 37261773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 18977222 - 18977309
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccctt 251  Q
    ||||||||||||||| |||| ||||| ||  | | |||||||| |||||||||||||| || || ||| |||||||||||||||||||    
T  18977222 gacgtgtcatcacttaaaatctgattggctgaattaaacgacttcatcgaagaagtcattttcctgacttcttcatagaagctccctt 18977309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 14810114 - 14810191
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   ||| |||||| |||| ||||| |||||||||||||    
T  14810114 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaa-atcatgaaataaa 14810191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 16429941 - 16429864
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||| ||||| |||||   |||||||||| |||| ||||| |||||||||||||    
T  16429941 aagaaaaatcatgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaa-atcatgaaataaa 16429864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 17690544 - 17690458
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccct 250  Q
    |||||||||||| || |||| ||||| |||||||||||||||| || ||||||||||| || || ||  || |||||||||||||||    
T  17690544 gacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgagttcatcatagaagctccct 17690458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 17690681 - 17690604
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   |||||||||| |||| ||||| ||||| |||||||    
T  17690681 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaa-atcataaaataaa 17690604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 14810251 - 14810336
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccct 250  Q
    |||||||||||| || |||| ||||| |||||||||||||||| || | ||||||||| || || ||| || |||||||||||||||    
T  14810251 gacgtgtcatcatttaaaatctgattggcccattcaaacgact-caccaaagaagtcattttcctgacttcatcatagaagctccct 14810336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 15330675 - 15330587
Alignment:
Q  164 gacgtgtcatcacttgaaatt-tgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccctt 251  Q
    |||||||||||| || ||||  ||||| |||||||||||||||| || ||||||||||| || || ||| || ||||| ||||||||||    
T  15330675 gacgtgtcatcatttaaaatactgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcataaaagctccctt 15330587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 16429804 - 16429724
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaag 244  Q
    |||||||||||| || |||| ||||| ||| |||||||||||| || ||||||||||| || || ||| || |||||||||    
T  16429804 gacgtgtcatcatttaaaatctgattggcctattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaag 16429724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 33755202 - 33755263
Alignment:
Q  159 tatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtc 220  Q
    |||| |||||||||||||||||||| | |||  ||||||||||||||| || |||| |||||    
T  33755202 tatctgacgtgtcatcacttgaaatctaattgacccattcaaacgacttcaccgaaaaagtc 33755263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 39241792 - 39241555
Alignment:
Q  8 gagagagaaacggaattataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaact 107  Q
    |||||||||  | ||||| ||||||||||||||||||| ||||||||||||||| | |||   || ||||||| ||||||| ||||||||||||||||||    
T  39241792 gagagagaattgtaattagaagaaaaatcatgtgtagatggtgtaccacaataacaaaga---caggtaaatctaaccgtt-aagatcatgaaataaact 39241697  T
Q  108 tgtccacggtggaagacatggaacaagtgatccatattagaatttgtc-cattatccgacgtgtcatcacttgaaatttgatt-agcccattcaaacgac 205  Q
    |||| | ||||||| | ||| | |||||||| |||||||||||||||| ||  ||| ||||||| ||||||| |||| ||||| | ||||||||||||||    
T  39241696 tgtctatggtggaacatatgaagcaagtgat-catattagaatttgtctcaacatctgacgtgttatcacttaaaatctgattgaccccattcaaacgac 39241598  T
Q  206 tgcatcgaagaagtcaattgcccgacatcttcatagaagctcc 248  Q
    | |||||||||||||| || ||  || ||||||||||||||||    
T  39241597 ttcatcgaagaagtcattttcctaacttcttcatagaagctcc 39241555  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 52385812 - 52386037
Alignment:
Q  26 taagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagaca 125  Q
    |||||||||||||||||||||||||||||||||||| |||||   |||  ||||| |||||| ||||||| ||||||||||||||| | ||||||| | |    
T  52385812 taagaaaaatcatgtgtagagggtgtaccacaataacatagagatcaaacaaatctaaccgt-aaagatcttgaaataaacttgtctatggtggaacata 52385910  T
Q  126 tggaacaagtgatccatattagaatttgtcc-attatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaatt 224  Q
    || |||| ||||||||| ||||||||||||| |  ||  || |||||||  |||||||| ||||| ||  | | |||||||| || |||| |||||||||    
T  52385911 tgaaacacgtgatccattttagaatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaatt 52386010  T
Q  225 gcccgacatcttcatagaagctccctt 251  Q
     ||| || |||||||||||||||||||    
T  52386011 tcccaacttcttcatagaagctccctt 52386037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 27286384 - 27286160
Alignment:
Q  25 ataagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagac 124  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||  ||||| ||||||| |||||  ||||||||||||||| | ||||||| |     
T  27286384 ataagaaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgtt-aagattttgaaataaacttgtctatggtggaacat 27286286  T
Q  125 atggaacaagtgatccatatt-agaatttgtccattatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaat 223  Q
    ||| | ||||||||||||||| | |||||  |||  ||| ||||||||||  |||||||| ||||| ||  | | |||||||| || |||| ||||||||    
T  27286285 atgaagcaagtgatccatattaaaaattttcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaat 27286186  T
Q  224 tgcccgacatcttcatagaagctccc 249  Q
    | | |||| |||||||||||||||||    
T  27286185 tcctcgacttcttcatagaagctccc 27286160  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 12981598 - 12981521
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   |||||||||| |||| ||||| |||||||||||||    
T  12981598 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaa-atcatgaaataaa 12981521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 45348267 - 45348344
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   |||||||||| |||| ||||| |||||||||||||    
T  45348267 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaa-atcatgaaataaa 45348344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 12981461 - 12981376
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccc 249  Q
    |||||||||||| || |||| ||||| |||||||||||||||| || ||||||||||| || || ||| || ||||||||||||||    
T  12981461 gacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 12981376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 45348404 - 45348491
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccctt 251  Q
    |||||||||||| || |||| |||||  || |||||||||||| || ||||||| ||| || || ||| || ||||||||||||||||    
T  45348404 gacgtgtcatcatttaaaatctgattgacctattcaaacgacttcaccgaagaaatcattttcctgacttcatcatagaagctccctt 45348491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 45325635 - 45325697
Alignment:
Q  28 agaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaa 90  Q
    |||||||||||||||||| ||| ||||||||||| |||||  | || |||||| |||||||||    
T  45325635 agaaaaatcatgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaa 45325697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 13802682 - 13802901
Alignment:
Q  30 aaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaacttgtccacggtggaagacatgga 129  Q
    |||||| ||||||||| ||||||||| ||||  |||||  ||||  ||||| |||| |||| |||||| || ||||  |||| | ||||||| | |||||    
T  13802682 aaaaattatgtgtagatggtgtaccataatacgatagagaccaaacaaatctaaccattaa-gatcatcaagtaaatctgtctatggtggaacatatgga 13802780  T
Q  130 acaagtgatccatattagaatttgtccatta--tccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcc 227  Q
     |||||||||||||||| ||||||||| |||  || ||||||||||||||| |||| ||||| |  |||||||||||||  | |||| |||||| ||  |    
T  13802781 gcaagtgatccatattataatttgtcc-ttacttctgacgtgtcatcacttaaaatctgattggttcattcaaacgactttaccgaaaaagtcattttac 13802879  T
Q  228 cgacatcttcatagaagctccc 249  Q
     ||| ||||| |||||||||||    
T  13802880 tgacttcttcgtagaagctccc 13802901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 30945452 - 30945527
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||||| ||||  |||||||||| |||| || ||||||||||||||||    
T  30945452 aagaaaaatcatgtgtagatggtgtaccacaataatagagat--caagtaaatctaaccatt-aagatcatgaaataaa 30945527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 531624 - 531539
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccc 249  Q
    |||||||||||| || |||| ||||| |||||||||||||||| || ||||||||||| || || ||| || ||||||||||||||    
T  531624 gacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 531539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 531761 - 531684
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   |||||||||| |||| ||||| || ||||||||||    
T  531761 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaa-attatgaaataaa 531684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 3879599 - 3879692
Alignment:
Q  159 tatccgacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccctta 252  Q
    |||| |||||||||||||||||||| | ||| || ||||||||||||| || |||| |||||  ||  | ||| ||||| ||||||||||||||    
T  3879599 tatctgacgtgtcatcacttgaaatctaattggctcattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcgtagaagctccctta 3879692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 3879472 - 3879543
Alignment:
Q  33 aatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    |||||||||||||   | ||||||||||| |||||  ||||||||||| |||| || ||||||||||||||||    
T  3879472 aatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccatt-aagatcatgaaataaa 3879543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 23614338 - 23614278
Alignment:
Q  30 aaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaa 90  Q
    |||||||||||||||||||||| |||||||| ||| ||  ||||  ||||| |||||||||    
T  23614338 aaaaatcatgtgtagagggtgtgccacaatattatggagaccaaacaaatctaaccgttaa 23614278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 30945587 - 30945677
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatc---gaagaagtcaattgcccgacatcttcatagaagctccctt 251  Q
    |||||||||||| || |||| |||||  ||||||||||||||| || |   |||||||||| || || ||| || ||||||||||||||||    
T  30945587 gacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaagaagaagtcattttcctgacttcatcatagaagctccctt 30945677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 30843 - 30928
Alignment:
Q  164 gacgtgtcatcacttgaaatttgattagcccattcaaacgactgcatcgaagaagtcaattgcccgacatcttcatagaagctccc 249  Q
    |||||||||||| || |||| ||||| |||||||||||||||| || ||||||||||| || || ||| || ||||||||||||||    
T  30843 gacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 30928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 30706 - 30783
Alignment:
Q  27 aagaaaaatcatgtgtagagggtgtaccacaataatatagatgccaagtaaatccaaccgttaaagatcatgaaataaa 105  Q
    ||||||||||||||||||| ||||||||||||||| |||||   |||||||||| |||| ||||| ||||| |||||||    
T  30706 aagaaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaa-atcataaaataaa 30783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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