View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18095_low_12 (Length: 316)
Name: NF18095_low_12
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18095_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 41598327 - 41598616
Alignment:
| Q |
1 |
agcattagagaagcgaattcacagattgtgagaggaacacttctggtaatggttactttgacaaatgttaaattaacagcattagccctctattttttaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41598327 |
agcattagagaagcaaattcacagattgtgagaggaacacttctggtaatgattactttgacaaatgttaaattaacagcattagccctctattttttaa |
41598426 |
T |
|
| Q |
101 |
taactttcacaaatgttctctcatatacagataccgtgtcgaacagcagcaaggggaagttttccgctgaatggaacttactttcaagttaatgaggtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41598427 |
taactttcacaaatgttctctcatatacagataccgtgtcgaacagcagcaaggggaagttttccgctgaatggaacttactttcaagttaatgaggtaa |
41598526 |
T |
|
| Q |
201 |
gtgtaatctagttttggtactgttccagtcaccttaacaaaatgaccttatattaaattttcaatactcaccaccaatggtctataaaacc |
291 |
Q |
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| T |
41598527 |
gtgtaatctagttttggtactgttccagtcaccttaacaaaattaccttatattaaa-tttcaatactcaccaccaatggtctataaaacc |
41598616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 41922177 - 41922216
Alignment:
| Q |
159 |
gttttccgctgaatggaacttactttcaagttaatgaggt |
198 |
Q |
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| T |
41922177 |
gttttcctctgaatggaacatactttcaagttaatgaggt |
41922216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 36001383 - 36001415
Alignment:
| Q |
168 |
tgaatggaacttactttcaagttaatgaggtaa |
200 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
36001383 |
tgaatggaacatactttcaagttaatgaggtaa |
36001415 |
T |
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