View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18095_low_2 (Length: 560)
Name: NF18095_low_2
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18095_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 12 - 543
Target Start/End: Complemental strand, 26570107 - 26569575
Alignment:
| Q |
12 |
atgaataaaagaaacccacttattatgggacgaagggagtaatagttagtttattaggttaatatattactctttgtacgggttagaacttagaacctcc |
111 |
Q |
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| T |
26570107 |
atgaataaaa-aaactcacttattaggagacgaagggagtagtagttagtttattaggttaatatattactctttgtacgggttagaactcagaacctcc |
26570009 |
T |
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| Q |
112 |
aactcttttaaaaatatattcacgatgaattggannnnnnnn--gtacaaacaaagaattagagttatttgcattatatatatagatgctaataatgcta |
209 |
Q |
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| T |
26570008 |
aactcttttaaaaatatattcactatgaattggatttttattttgtacaaacaaagaattagagttatttgcattatatatatagatgctaataatgcta |
26569909 |
T |
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| Q |
210 |
tatcaaatgctacagcctcaaaaagtattagcaaggaccacccatccaatttagaaactcttgttgtagatcattacaattcagtatgagaatcaaacaa |
309 |
Q |
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| T |
26569908 |
tatcaaatgctacagcctcaaaaagtattagcaaggaccacccatccaatttagaaactcttgttgtagatcattacaattcagtatgagaatcaaacaa |
26569809 |
T |
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| Q |
310 |
aatgttgnnnnnnnntttagatttggtgcgtataaatgggaaaatactcatctgtttgtacctatgtattttactacttctcatcactaactttacctat |
409 |
Q |
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| T |
26569808 |
aatgttagaaaaaaaattagatttggtgcgtataaatgggaaaacactcatctgtttgtacctatgtattttactacttttcatcactaactttacctat |
26569709 |
T |
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| Q |
410 |
ctccaaaccaccatctcttcctcctcctcctaaagaccaaaacggaatatggcatcaccatctcaaaactttgcatccaagttaacagcacttgttgtgg |
509 |
Q |
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| T |
26569708 |
ctccaaaccaccatctcttcctcctcctcctaaagaccaaaaccgaatatggcatcaccatctcaaaactttgcatccaagttaacagcacttgttgtgg |
26569609 |
T |
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| Q |
510 |
atgatgatgcaatgacccgaagaattcatcaaat |
543 |
Q |
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| T |
26569608 |
atgatgatgcaatgacccgaagaattcatcaaat |
26569575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 26571476 - 26571417
Alignment:
| Q |
252 |
catccaatttagaaactcttgttgtagatcattacaattcagtatgagaatcaaacaaaa |
311 |
Q |
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|||| |||||| |||||||||| ||||||||||| |||| ||||||| |||||||||||| |
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| T |
26571476 |
catctaatttaaaaactcttgtcgtagatcattataatttagtatgaaaatcaaacaaaa |
26571417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 513
Target Start/End: Original strand, 39924795 - 39924837
Alignment:
| Q |
471 |
ctcaaaactttgcatccaagttaacagcacttgttgtggatga |
513 |
Q |
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| T |
39924795 |
ctcaaaactttgtatccaagctaacagcactggttgtggatga |
39924837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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