View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18095_low_20 (Length: 234)
Name: NF18095_low_20
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18095_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 34959469 - 34959264
Alignment:
| Q |
13 |
attattcttatgtgacatgatttatccaattgttcctagttgaataggggatgatcctggggctatgctatgcccctttgctcccacaaagatggaaata |
112 |
Q |
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| T |
34959469 |
attattcttatgtgacatgatttatccaattgttgctagttgaataggggatgatcctggggctatgctatgcccctttgctcccacaaagatggaaata |
34959370 |
T |
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| Q |
113 |
aaaattagaggacaatcctaaagagcaacatatggcagaggttcacaggcccttgagaagatcttggaaccgtatggcagaggtttgtgcagaaaattga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | | |||||||||||||||||||||||||||| |
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| T |
34959369 |
aaaattagaggacaatcctaaagagcaacatatggcagaggttcacaggcccttgaaaagaacttgggaacatatggcagaggtttgtgcagaaaattga |
34959270 |
T |
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| Q |
213 |
agatct |
218 |
Q |
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|||||| |
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| T |
34959269 |
agatct |
34959264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 34955417 - 34955254
Alignment:
| Q |
13 |
attattcttatgtgacatgatttatccaattgttcctagttgaataggggatgatcctggggctatgctatgcccctttgctcccacaaagatggaaata |
112 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||| ||| ||||| |
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| T |
34955417 |
attattcttatgtgacatgattcatccaattgttgctagttgaataggggatgatcccggg-ctatg--atgcccctttgttcccacaaaaatgaaaata |
34955321 |
T |
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| Q |
113 |
aaaattagaggacaatcctaaagagcaacatatggcagaggttcacaggcccttgagaagatcttgg |
179 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||| |
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| T |
34955320 |
aaaaagtgaggacaatcctaaagagcaacacatggcagaggtttacaggcctttgagaagaacttgg |
34955254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 34955058 - 34955022
Alignment:
| Q |
182 |
ccgtatggcagaggtttgtgcagaaaattgaagatct |
218 |
Q |
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| T |
34955058 |
ccgtatggcagaggtttgtgcagaaaattgaagatct |
34955022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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