View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18095_low_22 (Length: 220)
Name: NF18095_low_22
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18095_low_22 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 250202 - 249995
Alignment:
| Q |
11 |
ttatactagggtttaatttgattataaaataattatttcttatnnnnnnnnttattatttgtgccttgatctaattaattaaatcaaaagggtctttcat |
110 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
250202 |
ttatactagggtttaattttattataaaattattgtttcttataaaaaa--ttactatttgtgccttgatctaattaattaaatcaaaagggtctttcat |
250105 |
T |
|
| Q |
111 |
ctagttaattttttataaatttaattaatttcttttgagttcatcaagttttgtttgagaagatgaggatttctggtcctgaagagaaaagagatgaatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
250104 |
ctagttaattttttataaatttaattaatttcttttgagttcatcaagttttgtttgagaagatgaggatttctggtcctaaagagaaaagagatgaatt |
250005 |
T |
|
| Q |
211 |
ttgttgttta |
220 |
Q |
| |
|
|||||||||| |
|
|
| T |
250004 |
ttgttgttta |
249995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 87 - 220
Target Start/End: Complemental strand, 249994 - 249859
Alignment:
| Q |
87 |
aattaaatcaaaagggtctttcatctagttaat---tttttataaatttaattaatttcttttgagttcatcaagttttgtttgagaagatgaggatttc |
183 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
249994 |
aattaaatcaaaagggtctttcatataattattatctttttataaatttaataaatttcttttgagttcatcaagttttgcttgagaagatgagggtttc |
249895 |
T |
|
| Q |
184 |
tggtcctgaagagaaaagagatgaattttgttgttta |
220 |
Q |
| |
|
| || || ||||||||||||||||||||| ||||||| |
|
|
| T |
249894 |
tagt-ctaaagagaaaagagatgaattttattgttta |
249859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University