View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18095_low_23 (Length: 204)
Name: NF18095_low_23
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18095_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 35020136 - 35020313
Alignment:
| Q |
5 |
gagaagcaaaggataagaaaaatgattagagannnnnnngatcttagtggttcatttgttgtttctgacacgttaccgtatttgagatggttggatttgg |
104 |
Q |
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| T |
35020136 |
gagaatcaaaggataagaaaaatgattagagatttttttaatcttagtggttcatttgttgtttctgacatgttaccgtatttgagatggttggatttgg |
35020235 |
T |
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| Q |
105 |
atggaaaacagaagcaaatgaagaaaacagcaaaagaaatggatgagtttgtttgtgtttggcttgatcaacacaaac |
182 |
Q |
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| T |
35020236 |
atggaaaacagaagcaaatgaagaaaacagcaaaagagttagatgactttgtttgtgtttggcttgatcagcacaaac |
35020313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 35036374 - 35036513
Alignment:
| Q |
44 |
gatcttagtggttcatttgttgtttctgacacgttaccgtatttgagatggttggatttggatggaaaacagaagcaaatgaagaaaacagcaaaagaaa |
143 |
Q |
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| T |
35036374 |
gatctcagcggttcatttgttatatctgacatgttgcggttttttagatggttggatttggatggaaaacagaagcagatgaagaaaacggctaaagagt |
35036473 |
T |
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| Q |
144 |
tggatgagtttgtttgtgtttggcttgatcaacacaaacg |
183 |
Q |
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| T |
35036474 |
tagatgattttgttcaagtttggctcgatcaacacaaacg |
35036513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 35044506 - 35044645
Alignment:
| Q |
45 |
atcttagtggttcatttgttgtttctgacacgttaccgtatttgagatggttggatttggatggaaaacagaagcaaatgaagaaaacagcaaaagaaat |
144 |
Q |
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| T |
35044506 |
atctttgtggttcctttgttatatctgattcgttgccgtttttaagatggttggatttggatggaaaagagaaggaaatgaagaaaactgctaaagagtt |
35044605 |
T |
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| Q |
145 |
ggatgagtttgtttgtgtttggcttgatcaacacaaacgt |
184 |
Q |
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| T |
35044606 |
ggatgagtttgttcaaggttggattgatcaacacaaacgt |
35044645 |
T |
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