View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18095_low_4 (Length: 498)
Name: NF18095_low_4
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18095_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 38293179 - 38293672
Alignment:
| Q |
1 |
ggcaattatatttgctgttagctctcgaaattcttcagtcatctctattttctttgatttctcctttgtttcaatagcttgctttttccactcttctagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38293179 |
ggcaattatatttgctgttagctctcgaaattcttcagtcatctctattttctttgatttctcctttgtttcaatagcttgctttttccactcttctagc |
38293278 |
T |
|
| Q |
101 |
atggaaatggtacatgctgccattctacttatcataacctgtcaaatatatgatatagcatttagaatgcacgcatatacaatgccaaatgccaatgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38293279 |
atggaaatggtacatgctgccattctacttatcataacctgtcaaatatatgatatagcatttagaatgcacgcatatacaatgccaaatgccaatgaaa |
38293378 |
T |
|
| Q |
201 |
gaagaattaatttctaatctttttacttatttttaccaatgactat-----------------gtatcaactcgagataacaaagatctatttaaggggt |
283 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38293379 |
gaagaattaatttctattctttttacttatttttaccaatgactattttcttgataaatcaaggtatcgactcgagataacaaagatctatttaaggggt |
38293478 |
T |
|
| Q |
284 |
tgatatatcaattatgtaacaccaattgaatctataataaagaatatgatatcttttgaaaatcttgtctaataaattaaaagtcgagttttgtaaaata |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
38293479 |
tgatatatcaattatgtaacaccaattgaatttataataaagaatatgatatcttttgaaaatcttgtctgataaattaaaaggtgagttttgtaaaata |
38293578 |
T |
|
| Q |
384 |
aattttgatttctcttctaaaaattaactcaaggaatgaaagcgctcaaacatacatacacatgttacccaaccgtcaaatgtgagattctaatac |
479 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||| || ||| ||||||||| ||||| |||||||||||| |
|
|
| T |
38293579 |
aattttgatttctcttctaaaagttacctcaaggaatgaaagcgttcaaacatacacacatat-ttatccaaccgtc-aatgtaagattctaatac |
38293672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University