View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18095_low_5 (Length: 458)
Name: NF18095_low_5
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18095_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 196 - 441
Target Start/End: Complemental strand, 43868789 - 43868542
Alignment:
| Q |
196 |
ccttagaactaaaattgactcatttgttcgactccgaggattgacttcatattctacagtttaattggttcaagtcatcggagacaaatttactccaaat |
295 |
Q |
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| T |
43868789 |
ccttagaactaaaattcactcatttgttcgactccgaggattgacttcatattctacactttaagtggttcatgtcatcggagacaaatttactccaaat |
43868690 |
T |
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| Q |
296 |
catgagaagataatgtaggccttaccttaaactttatatttagttttgctcttcaccatcaatatttgctgcattgttatggttgtttatcggttaattt |
395 |
Q |
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| T |
43868689 |
catgagaagataatgtaggccttaccttaaactttatatttagttttgctcttcaccatcaatatttgctgcattgttatggttgtttatcggttaattt |
43868590 |
T |
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| Q |
396 |
taataacacaataaaaatttaatagcagtggtt--tattacttaaaac |
441 |
Q |
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| T |
43868589 |
taataacacaataaaaatttaatagcagtggttaatattacttaaaac |
43868542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 43868926 - 43868852
Alignment:
| Q |
59 |
agaatgatagttgatctaaggataaagataaataaactttgatgttaaattttgaatgatataaatcatacaatg |
133 |
Q |
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| T |
43868926 |
agaatgatagttgatctaaggataaagataaataaactttgatgttaaattttgaatgatataaaccatacaatg |
43868852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 43868994 - 43868928
Alignment:
| Q |
18 |
atgaaaggggtgtgtttggaggtcatgttcttgaatgaaggagaatgatagttgatctaaggataaa |
84 |
Q |
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| T |
43868994 |
atgaaaggggtgtgtttggaggtcatgttcttgaatgaaggagaatgatagttgatctaaggataaa |
43868928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 43869821 - 43869898
Alignment:
| Q |
45 |
ttcttgaatgaaggagaatgatagttgatctaaggataaagataaataaactttgatgttaaattttgaatgatataa |
122 |
Q |
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| T |
43869821 |
ttctttaatgaaggagaatgttgattgatcgaaggataaagatgatgaaactttgattttaaattttaattgatataa |
43869898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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