View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18095_low_9 (Length: 346)
Name: NF18095_low_9
Description: NF18095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18095_low_9 |
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| [»] scaffold0086 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 211 - 329
Target Start/End: Complemental strand, 5188256 - 5188136
Alignment:
| Q |
211 |
ttgaaggcttgaagtttcatttacct--taaacgcacactgcaatgttgaaacactgtttgaaaggtatgatatctttacacatcttgcttacttccaac |
308 |
Q |
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| T |
5188256 |
ttgaaggcttgaagtttcatttacctattaaacgcacactgcaatgttgaaacactgtttgaaaggtatgatatctttacgcatcttgcttacttccaac |
5188157 |
T |
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| Q |
309 |
gtgtaattttaattcgatctg |
329 |
Q |
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| T |
5188156 |
gtgtaattttaattcgatctg |
5188136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 5242384 - 5242328
Alignment:
| Q |
19 |
ataacaatgtgttttaactttttaatcttcaattatatttggccattttctcatttc |
75 |
Q |
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| T |
5242384 |
ataacaatgtgttttaattttttaatcttcaattatatttggccattttctcatttc |
5242328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 206 - 322
Target Start/End: Complemental strand, 47668 - 47550
Alignment:
| Q |
206 |
ttaccttgaaggcttgaagtttcatttaccttaaacgcacactgcaatgttgaaacac--tgtttgaaaggtatgatatctttacacatcttgcttactt |
303 |
Q |
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| T |
47668 |
ttaccttgaagacttgaagtttcatttaccccaaatgaacactgcaacgttgaaatacaatatttgaaaggtatgatatctttacacatcttacttactt |
47569 |
T |
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| Q |
304 |
ccaacgtgtaattttaatt |
322 |
Q |
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| T |
47568 |
ccaacgtgtaattttaatt |
47550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 47779 - 47735
Alignment:
| Q |
121 |
caccattgatagtcaatagtatatgcaccaatttcctttcattat |
165 |
Q |
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| T |
47779 |
caccattgatagtcaatagtatatgcagcaatttgctttcattat |
47735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 326
Target Start/End: Original strand, 25133359 - 25133479
Alignment:
| Q |
206 |
ttaccttgaaggcttgaagtttcatttaccttaaacgcacactgcaatgttgaaacactgtttgaaaggtatgatatctttacacatcttgcttacttcc |
305 |
Q |
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| T |
25133359 |
ttactttgaaggcttgaagtttcatttaccctaaagacacactacaacattgaaataatatttgaaaggtaggctgtctttacacatgttacttacttcc |
25133458 |
T |
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| Q |
306 |
aacgtgtaattttaattcgat |
326 |
Q |
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| T |
25133459 |
aacctctaattttaattcgat |
25133479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 25133137 - 25133194
Alignment:
| Q |
87 |
tcaattgatttgcagttataatctaatatgccttcaccattgatagtcaatagtatat |
144 |
Q |
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| T |
25133137 |
tcaattgatttgccgttataagttaatatgcttccaccattgatagtgaatagtatat |
25133194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 25133241 - 25133289
Alignment:
| Q |
156 |
ctttcattatactgcattcattcttaggcaattatgaaattagactaat |
204 |
Q |
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| T |
25133241 |
ctttcattatactacattcatttttaagtgattatgaaattagactaat |
25133289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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