View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18096_high_1 (Length: 442)
Name: NF18096_high_1
Description: NF18096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18096_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 26 - 419
Target Start/End: Complemental strand, 42026278 - 42025887
Alignment:
| Q |
26 |
tattaatcaacaatatttgatatttattattttaataatgaaaaatagttacattatactcaatgatcccatcaccagttgtagcattaagaaaatgagc |
125 |
Q |
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| T |
42026278 |
tattaatcaacaatatttgatatttattattttaataatgaaaaacagttacattatactcaacgatcccatcaccagttgtagcattaagaaaatgagc |
42026179 |
T |
|
| Q |
126 |
cctaatctgagcaaaaccagtggccatcctaaacattcctcttcctccgaccaccgcgagttccctcgtcggttccctcaccggattcctcgaaagaaca |
225 |
Q |
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| T |
42026178 |
cctaatctgagcaaaaccagtggccatcctaaactttcctcttcctccgaccaccgcgagttccctcgtcggttccctcaccggattcctcgaaagaaca |
42026079 |
T |
|
| Q |
226 |
ctaaaggagcttccatttaattcaccagaggtgaaagcataatcaacatacatagtaagtgtcacatcttcactttggctagagatgccacataaagatc |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |
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| T |
42026078 |
ctaaaggagcttccatttaattcaccagaggtgaaagcataatcaacatacatagtaagtgtcacatcttcactctggct--agatgccacataaagacc |
42025981 |
T |
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| Q |
326 |
ttgtgcatttccaaccacatttgatgtttcttcaggaccttccctaagaggattgtcaatggcataaacagtaccaaacaatgaatgtttctta |
419 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42025980 |
ttgtgcatttccaactacatttgatgtttcttcaggaccttccctaagaggattgtcaatggcataaacagtaccaaacaatgaatgtttctta |
42025887 |
T |
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