View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18096_low_5 (Length: 208)
Name: NF18096_low_5
Description: NF18096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18096_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 42414916 - 42414728
Alignment:
| Q |
1 |
ccatacaaagatcattgaaccttacacctttcacaggaattgggagagaatgcccttgctgggaatgtgaagttgcaagttcagattctttttgcatact |
100 |
Q |
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| T |
42414916 |
ccatacaaagatcattgaaccttacacctttcacaggaattgggagagaatgcctttgctgggaatgtgaagttgcaagttcagattctttttgcatact |
42414817 |
T |
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| Q |
101 |
tggtattgaactatctgagttatggttctcattatttgttttttgttctcttggttgatcagagaagttaattactacggtaggtgatg |
189 |
Q |
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| T |
42414816 |
tggtattgaactatctgagttatggttctcattatttgttttttgttctcttggttgatcagagaagttaattactacggcaggtgatg |
42414728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 82 - 187
Target Start/End: Original strand, 24123172 - 24123277
Alignment:
| Q |
82 |
cagattctttttgcatacttggtattgaactatctgagttatggttctcattatttgttttttgttctcttggttgatcagagaagttaattactacggt |
181 |
Q |
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| T |
24123172 |
cagattctttttgcatacttggtattggactatatgagttatggttctcattatttgttttttgttctctttgttgatcagagaagttaattactactgc |
24123271 |
T |
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| Q |
182 |
aggtga |
187 |
Q |
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|||||| |
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| T |
24123272 |
aggtga |
24123277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 18978923 - 18978818
Alignment:
| Q |
82 |
cagattctttttgcatacttggtattgaactatctgagttatggttctcattatttgttttttgttctcttggttgatcagagaagttaattactacggt |
181 |
Q |
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| T |
18978923 |
cagatcctgtttgcatacttggtattgaactatatgagttatggttctcattatttgttttttgttctctttgttgatcagagaagttaattactactgc |
18978824 |
T |
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| Q |
182 |
aggtga |
187 |
Q |
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|||||| |
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| T |
18978823 |
aggtga |
18978818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 18972758 - 18972825
Alignment:
| Q |
111 |
ctatctgagttatggttctcattatttgttttttgttctcttggttgatcagagaagttaattactac |
178 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
18972758 |
ctatatgagttatggttctcattatttattttttgttctctttgttgatcagagaagttaattactac |
18972825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 44410711 - 44410646
Alignment:
| Q |
113 |
atctgagttatggttctcattatttgttttttgttctcttggttgatcagagaagttaattactac |
178 |
Q |
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| T |
44410711 |
atctgagttatggttgtcattatttgttttttgttctctttgttgatcagagaagttaattactac |
44410646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 44411771 - 44411733
Alignment:
| Q |
82 |
cagattctttttgcatacttggtattgaactatctgagt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
44411771 |
cagattctttttgcatacttggtattgaactatctgagt |
44411733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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