View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18097_high_11 (Length: 336)
Name: NF18097_high_11
Description: NF18097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18097_high_11 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 32457393 - 32457089
Alignment:
| Q |
20 |
aaaccaagcaaattcaacatctctaaccccactcaccttcttagacagagcagccactgtctatggcaactccatttccatcatatacaacaacacttca |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||| |
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| T |
32457393 |
aaaccaagcaaattcaacggctctaaccccactcaccttcttagaaagagcagccactgtctatggcaactccatttcaatcatatacaacaatacctca |
32457294 |
T |
|
| Q |
120 |
ttcacttggtctcaaacccacaaaagatgtcttcaacttgcttcatcactttcttccctcggcatccaaaaaggcgatgtcgtctccgtcctttccccca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32457293 |
ttcacttggtctcaaacccacaaaagatgtcttcaacttgcttcatcactttcttccctcggcatccaaaaaggcgatgtcgtctccgtcctttccccca |
32457194 |
T |
|
| Q |
220 |
acactccggccatgtatgagcttcatttctccgttccaatgtccggcgccattctcaataacctcaacttccgacttgaccacaaaaccctctccgttca |
319 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32457193 |
acactccggccatgtacgagcttcatttctccgttccaatgtccggcgccattctcaataacctcaacttccgacttgaccacaaaaccctctccgttct |
32457094 |
T |
|
| Q |
320 |
tctca |
324 |
Q |
| |
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||||| |
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| T |
32457093 |
tctca |
32457089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 32463742 - 32464040
Alignment:
| Q |
20 |
aaaccaagcaaattcaacatctctaaccccactcaccttcttagacagagcagccactgtctatggcaactccatttccatcatatacaacaacacttca |
119 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||| |
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| T |
32463742 |
aaaccaagcaaattcaacagctctaaccccactcaccttcttagaaagagcagccactgtctatggcaactccatttcaatcatatacaacaatacctca |
32463841 |
T |
|
| Q |
120 |
ttcacttggtctcaaacccacaaaagatgtcttcaacttgcttcatcactttcttccctcggcatccaaaaaggcgatgtcgtctccgtcctttccccca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32463842 |
ttcacttggtctcaaacccacaaaagatgtcttcaacttgcttcatcactttcttccctcggcatccaaaaaggcgacgtcgtctccgtcctttccccca |
32463941 |
T |
|
| Q |
220 |
acactccggccatgtatgagcttcatttctccgttccaatgtccggcgccattctcaataacctcaacttccgacttgaccacaaaaccctctccgttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| |
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| T |
32463942 |
acactccggccatgtatgagcttcatttctccgttccaatgtccggcgccattctcaataacctcaacttccgactcgaccacaaaagcctctctgttc |
32464040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 23166 - 23461
Alignment:
| Q |
20 |
aaaccaagcaaattcaacatctctaaccccactcaccttcttagacagagcagccactgtctatggcaactccatttccatcatatacaacaacacttca |
119 |
Q |
| |
|
|||||||||||| || ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
23166 |
aaaccaagcaaactcgacacctctaaccccactcaccttcttagacagagcagctactgtctatggcaactccatatcaatcatatacaacagcacttca |
23265 |
T |
|
| Q |
120 |
ttcacttggtctcaaacccacaaaagatgtcttcaacttgcttcatcactttcttccctcggcatccaaaaaggcgatgtcgtctccgtcctttccccca |
219 |
Q |
| |
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||||| |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||| |
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| T |
23266 |
ttcacatggtttcaaacccataaacgatgtcttcaacttgcttcatcactttcttccctcggcatcgtaaaaggcgacgtcgtctccgtcctctctccca |
23365 |
T |
|
| Q |
220 |
acactccggccatgtatgagcttcatttctccgttccaatgtccggcgccattctcaataacctcaacttccgacttgaccacaaaaccctctccg |
315 |
Q |
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|||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |
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| T |
23366 |
acactccggccatgtacgagctacaattctccgttccaatgtccggcgccattctcaacaacctcagcttccgacttgactacaaaaccctctccg |
23461 |
T |
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