View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18097_high_17 (Length: 203)

Name: NF18097_high_17
Description: NF18097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18097_high_17
NF18097_high_17
[»] chr5 (30 HSPs)
chr5 (11-173)||(14574166-14574328)
chr5 (129-176)||(19783649-19783696)
chr5 (122-178)||(8544996-8545052)
chr5 (129-177)||(35109399-35109447)
chr5 (132-175)||(31159430-31159473)
chr5 (125-178)||(12285612-12285665)
chr5 (129-177)||(16485977-16486025)
chr5 (122-178)||(36623181-36623237)
chr5 (127-183)||(40445976-40446032)
chr5 (115-178)||(13864342-13864405)
chr5 (118-157)||(17985248-17985287)
chr5 (115-178)||(18589867-18589930)
chr5 (119-178)||(22297383-22297442)
chr5 (126-165)||(25607069-25607108)
chr5 (116-178)||(32793041-32793104)
chr5 (130-176)||(1476125-1476171)
chr5 (127-177)||(6898020-6898070)
chr5 (129-178)||(21212067-21212117)
chr5 (126-176)||(22498942-22498992)
chr5 (129-171)||(32460016-32460058)
chr5 (130-175)||(5001556-5001601)
chr5 (115-152)||(18489076-18489113)
chr5 (130-183)||(30893926-30893979)
chr5 (115-152)||(39938782-39938819)
chr5 (107-183)||(781856-781932)
chr5 (129-185)||(2249430-2249486)
chr5 (115-183)||(6489000-6489068)
chr5 (115-183)||(7713525-7713593)
chr5 (126-178)||(13796328-13796380)
chr5 (130-178)||(23118066-23118114)
[»] chr4 (22 HSPs)
chr4 (127-177)||(19124634-19124684)
chr4 (115-177)||(38374956-38375018)
chr4 (128-177)||(11269693-11269742)
chr4 (129-177)||(7371562-7371610)
chr4 (107-183)||(31041357-31041433)
chr4 (116-183)||(29908049-29908116)
chr4 (129-186)||(36203226-36203283)
chr4 (115-163)||(11144665-11144713)
chr4 (121-177)||(18635529-18635585)
chr4 (115-178)||(13121542-13121605)
chr4 (107-178)||(18903750-18903821)
chr4 (136-183)||(24837494-24837541)
chr4 (115-178)||(34033331-34033394)
chr4 (133-176)||(40847085-40847128)
chr4 (115-178)||(49041981-49042044)
chr4 (118-183)||(5534503-5534568)
chr4 (128-177)||(43183006-43183055)
chr4 (122-178)||(6459931-6459987)
chr4 (126-178)||(7967636-7967688)
chr4 (130-178)||(41536920-41536968)
chr4 (129-177)||(42316838-42316886)
chr4 (129-177)||(53530008-53530056)
[»] chr3 (19 HSPs)
chr3 (122-183)||(7824800-7824861)
chr3 (118-178)||(9778807-9778867)
chr3 (115-170)||(1111841-1111896)
chr3 (114-152)||(2153500-2153538)
chr3 (116-178)||(27185475-27185537)
chr3 (116-178)||(35863814-35863876)
chr3 (122-183)||(7827501-7827562)
chr3 (127-184)||(11574245-11574302)
chr3 (116-177)||(21245792-21245853)
chr3 (130-183)||(23629760-23629813)
chr3 (130-183)||(43011315-43011368)
chr3 (133-178)||(44799073-44799118)
chr3 (128-184)||(1149082-1149138)
chr3 (130-178)||(5117206-5117254)
chr3 (107-183)||(8127456-8127532)
chr3 (130-178)||(29791774-29791822)
chr3 (128-176)||(38573586-38573634)
chr3 (118-178)||(49600267-49600327)
chr3 (115-183)||(51250233-51250301)
[»] scaffold0896 (1 HSPs)
scaffold0896 (107-178)||(3139-3209)
[»] chr7 (26 HSPs)
chr7 (115-182)||(48007547-48007614)
chr7 (126-178)||(45979111-45979163)
chr7 (126-175)||(7481226-7481275)
chr7 (126-178)||(5458082-5458134)
chr7 (114-170)||(32862081-32862137)
chr7 (123-178)||(429186-429241)
chr7 (113-176)||(6384851-6384914)
chr7 (130-177)||(32315222-32315269)
chr7 (130-177)||(38911298-38911345)
chr7 (122-177)||(48527189-48527244)
chr7 (122-176)||(1627942-1627996)
chr7 (115-169)||(4044605-4044659)
chr7 (117-183)||(5041332-5041398)
chr7 (127-177)||(35165532-35165582)
chr7 (126-176)||(37864425-37864475)
chr7 (116-186)||(41860259-41860329)
chr7 (130-183)||(3584197-3584250)
chr7 (115-152)||(3671848-3671885)
chr7 (130-178)||(8879762-8879810)
chr7 (132-176)||(10029842-10029886)
chr7 (116-152)||(16577861-16577897)
chr7 (116-152)||(16587765-16587801)
chr7 (129-185)||(21554948-21555004)
chr7 (107-183)||(30857241-30857317)
chr7 (130-170)||(45425459-45425499)
chr7 (137-177)||(47195574-47195614)
[»] chr6 (26 HSPs)
chr6 (107-178)||(7081646-7081717)
chr6 (107-178)||(8810638-8810708)
chr6 (127-183)||(12412270-12412326)
chr6 (115-178)||(13496114-13496177)
chr6 (126-174)||(334142-334190)
chr6 (129-177)||(4450261-4450309)
chr6 (115-175)||(21941459-21941519)
chr6 (115-183)||(28898849-28898917)
chr6 (115-183)||(29335575-29335643)
chr6 (129-183)||(5040847-5040901)
chr6 (130-188)||(15291705-15291763)
chr6 (116-178)||(17151234-17151296)
chr6 (133-178)||(404161-404206)
chr6 (115-184)||(788858-788927)
chr6 (115-152)||(2473627-2473664)
chr6 (136-177)||(6470637-6470678)
chr6 (122-183)||(8916481-8916542)
chr6 (129-178)||(18256881-18256930)
chr6 (130-187)||(31140827-31140884)
chr6 (130-178)||(331901-331949)
chr6 (108-152)||(1535327-1535371)
chr6 (116-176)||(2617206-2617266)
chr6 (129-177)||(8381208-8381256)
chr6 (126-178)||(12602023-12602075)
chr6 (116-152)||(17329979-17330015)
chr6 (115-171)||(21598962-21599018)
[»] chr1 (32 HSPs)
chr1 (129-178)||(29506825-29506874)
chr1 (107-178)||(31979427-31979498)
chr1 (117-178)||(563199-563260)
chr1 (116-177)||(32950762-32950823)
chr1 (127-176)||(34848476-34848525)
chr1 (115-183)||(42045372-42045440)
chr1 (107-151)||(42440140-42440184)
chr1 (126-178)||(44220985-44221037)
chr1 (114-177)||(17651379-17651442)
chr1 (127-178)||(26705598-26705649)
chr1 (126-176)||(12213993-12214043)
chr1 (117-183)||(16033452-16033518)
chr1 (129-175)||(23405372-23405418)
chr1 (133-183)||(30279638-30279688)
chr1 (130-176)||(43843891-43843937)
chr1 (127-176)||(28039872-28039921)
chr1 (107-152)||(29987104-29987149)
chr1 (130-175)||(30548106-30548151)
chr1 (132-177)||(47835732-47835777)
chr1 (129-178)||(49875613-49875662)
chr1 (126-183)||(52267757-52267814)
chr1 (132-183)||(1761454-1761506)
chr1 (126-174)||(4859085-4859133)
chr1 (129-176)||(10654461-10654509)
chr1 (115-155)||(11681244-11681284)
chr1 (130-178)||(16967209-16967257)
chr1 (129-177)||(19620575-19620623)
chr1 (130-178)||(24978242-24978290)
chr1 (129-177)||(31401667-31401715)
chr1 (116-152)||(47070872-47070908)
chr1 (129-177)||(47071972-47072020)
chr1 (115-183)||(52441511-52441579)
[»] chr8 (23 HSPs)
chr8 (130-178)||(17062354-17062402)
chr8 (130-178)||(17585956-17586004)
chr8 (107-174)||(29546895-29546962)
chr8 (122-176)||(6248301-6248355)
chr8 (129-178)||(1877676-1877725)
chr8 (115-183)||(29376894-29376962)
chr8 (115-183)||(29924917-29924985)
chr8 (116-178)||(2181126-2181188)
chr8 (122-152)||(9014684-9014714)
chr8 (117-183)||(27191751-27191817)
chr8 (117-187)||(27718896-27718966)
chr8 (117-183)||(29293170-29293236)
chr8 (116-178)||(32223880-32223942)
chr8 (130-176)||(36392837-36392883)
chr8 (115-185)||(39821875-39821945)
chr8 (117-150)||(10656441-10656474)
chr8 (129-178)||(11771705-11771754)
chr8 (130-179)||(30071531-30071580)
chr8 (115-184)||(36781400-36781469)
chr8 (126-183)||(39433403-39433460)
chr8 (115-183)||(6394757-6394825)
chr8 (115-175)||(9019564-9019624)
chr8 (130-178)||(28084280-28084328)
[»] chr2 (22 HSPs)
chr2 (121-176)||(16204823-16204878)
chr2 (115-178)||(34977202-34977265)
chr2 (130-178)||(40967386-40967434)
chr2 (134-177)||(10076873-10076916)
chr2 (130-177)||(37320532-37320579)
chr2 (127-170)||(42200693-42200736)
chr2 (126-188)||(12599876-12599938)
chr2 (126-176)||(24520650-24520700)
chr2 (101-170)||(3904208-3904277)
chr2 (107-152)||(23407010-23407055)
chr2 (122-183)||(33063979-33064040)
chr2 (126-178)||(2256969-2257021)
chr2 (131-183)||(5676732-5676784)
chr2 (115-183)||(7206118-7206186)
chr2 (122-178)||(7537108-7537164)
chr2 (114-178)||(10195661-10195725)
chr2 (130-178)||(20990919-20990967)
chr2 (115-183)||(29896294-29896362)
chr2 (118-178)||(35372942-35373002)
chr2 (109-173)||(40895858-40895922)
chr2 (127-183)||(42475122-42475178)
chr2 (131-183)||(44694681-44694733)
[»] scaffold0088 (1 HSPs)
scaffold0088 (122-178)||(48019-48075)
[»] scaffold0016 (1 HSPs)
scaffold0016 (117-178)||(99035-99096)
[»] scaffold0238 (1 HSPs)
scaffold0238 (129-177)||(25388-25436)
[»] scaffold0126 (1 HSPs)
scaffold0126 (129-177)||(34902-34950)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 9e-66; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 14574166 - 14574328
Alignment:
Q  11 tgagatgaacaagaaagaggggattggtgaaaaataccttatttcatgtctatgtgtaattgatttagattacaaagcttttatagattatttttgggtg 110  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14574166 tgaggtgaacaagaaagagggggttggtgaaaaataccttatttcatgtctatgtgtaattgatttagattacaaagcttttatagattatttttgggtg 14574265  T
Q  111 gttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagct 173  Q
    | |||||||||||| ||||||||| |||||||||| ||||||| ||| ||||| |||||||||    
T  14574266 gctagggtttaaaccccagaccttacatatattatatattgtacttaccaactgagttaagct 14574328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 19783649 - 19783696
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  19783649 gaccttgcatatattatgtattgtctttatcaactaagttaagctcac 19783696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 8544996 - 8545052
Alignment:
Q  122 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||| |||||||||||||||||| |||||  ||||||||| ||||||||||||||    
T  8544996 aactccggaccttgcatatattatgcattgtccttatcaactgagttaagctcacga 8545052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 35109447 - 35109399
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||||||    
T  35109447 gaccttgcatatattatgtattgtctttaccaactgagttaagctcacg 35109399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 31159473 - 31159430
Alignment:
Q  132 cttgcatatattatgtattgtatttatcaactaagttaagctca 175  Q
    ||||||||||||||||||||| |||||||||| |||||||||||    
T  31159473 cttgcatatattatgtattgtctttatcaactgagttaagctca 31159430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 12285612 - 12285665
Alignment:
Q  125 tccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||| |||||||||||||||| |||||| |||||||||| ||||||| ||||||    
T  12285612 tccaaaccttgcatatattatatattgtctttatcaactgagttaagttcacga 12285665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 16485977 - 16486025
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||||||||||||||||||||| |||| | ||| |||||||||||||    
T  16485977 gaccttgcatatattatgtattgtctttaccgacttagttaagctcacg 16486025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 36623181 - 36623237
Alignment:
Q  122 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||| ||||||||||||||||||| ||| |  ||||||||| ||||||||||||||    
T  36623181 aactctagaccttgcatatattatgcattattcttatcaactgagttaagctcacga 36623237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 40446032 - 40445976
Alignment:
Q  127 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||||||||||||||||| |||||  ||||||||| |||||| ||||||| ||||    
T  40446032 cagaccttgcatatattatgcattgtccttatcaactgagttaaactcacgaggaca 40445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 13864405 - 13864342
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||| ||| || ||||||||||||||||||||||||   || ||||| ||||||||||||||    
T  13864405 gggtttgaaccccggaccttgcatatattatgtattgttcataccaactgagttaagctcacga 13864342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 17985287 - 17985248
Alignment:
Q  118 tttaaactccagaccttgcatatattatgtattgtattta 157  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  17985287 tttaaacttcagaccttgcatatattatgtattgttttta 17985248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 18589867 - 18589930
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||||||| || |||||||||||||||||| |||||   || ||||| ||||||||||||||    
T  18589867 gggtttaaaccccggaccttgcatatattatgcattgttcataccaactgagttaagctcacga 18589930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 22297442 - 22297383
Alignment:
Q  119 ttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||| |||||||||||||||||||||||||||  ||| ||||| || |||| ||||||    
T  22297442 ttaaaccccagaccttgcatatattatgtattgttcttaccaactgagctaaggtcacga 22297383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 25607069 - 25607108
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaa 165  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  25607069 ccagaccttgcatatattatgcattgtctttatcaactaa 25607108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 32793041 - 32793104
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtatt-gtatttatcaactaagttaagctcacga 178  Q
    ||||| |||||||||||||  |||||||||| ||| ||  ||||||||||||||||||||||||    
T  32793041 ggtttgaactccagaccttagatatattatgcatttgttcttatcaactaagttaagctcacga 32793104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 1476125 - 1476171
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    ||||||||||||||||| ||| | |||| ||||||||||||||||||    
T  1476125 accttgcatatattatgaattatttttaccaactaagttaagctcac 1476171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 6898070 - 6898020
Alignment:
Q  127 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||| |||||||||||||| ||| | |||| |||||||||||||||||||    
T  6898070 cagactttgcatatattatgcattatctttaccaactaagttaagctcacg 6898020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 21212067 - 21212117
Alignment:
Q  129 gaccttgcatata-ttatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||| |||||||||||   |||||||||||||||||||||||    
T  21212067 gaccttgcatataattatgtattgtccatatcaactaagttaagctcacga 21212117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 22498992 - 22498942
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    ||||||||||||||||||||| |||||  ||| ||||| ||||||||||||    
T  22498992 ccagaccttgcatatattatgcattgtccttaccaactgagttaagctcac 22498942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 32460058 - 32460016
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaag 171  Q
    ||||||| |||||||||||||||| |||||||||| |||||||    
T  32460058 gaccttgtatatattatgtattgtctttatcaactgagttaag 32460016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 5001601 - 5001556
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctca 175  Q
    |||||||||||||||||||||||  ||||||||  |||||||||||    
T  5001601 accttgcatatattatgtattgtccttatcaaccgagttaagctca 5001556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 18489076 - 18489113
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgt 152  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  18489076 gggttcaaactccagaccttgcatatattatgcattgt 18489113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 30893979 - 30893926
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||||||||||| ||||| ||||  |||| |||||||||||||| ||||    
T  30893979 accttgcatatattatgcattgtctttacaaactgagttaagctcacgaggaca 30893926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 39938819 - 39938782
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgt 152  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  39938819 gggtttaaacttcggaccttgcatatattatgtattgt 39938782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 781932 - 781856
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||| ||||||  ||| ||||||||||||||| ||||  |||||   |||||||| ||||||||||| |||||||    
T  781932 ggtggtcagggttcgaaccccagaccttgcatattttatacattgtccctatcaactgagttaagctcaagacgaca 781856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 2249430 - 2249486
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagt 185  Q
    |||||| |||||||||||||||||  |||  |||| |||||||||||||| ||||||    
T  2249430 gaccttacatatattatgtattgtccttactaactgagttaagctcacgaggacagt 2249486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 6489068 - 6489000
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||| ||| ||||||||||||||||||||| |||||   || ||||| || ||||||||||| ||||    
T  6489068 gggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 6489000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 7713593 - 7713525
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||| ||||||| ||||||||||||||||| ||| |   |||||||| |||||| ||||||| ||||    
T  7713593 gggtttgaactccaaaccttgcatatattatgcattattcatatcaactgagttaaactcacgaagaca 7713525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 13796380 - 13796328
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||||||| |||||   |||| ||| ||||||||||||||    
T  13796380 ccagaccttgcatatattatgcattgttcatatcgactgagttaagctcacga 13796328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 23118066 - 23118114
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||| ||||||||||| |||||  ||||||||| ||||||||||||||    
T  23118066 accttacatatattatgcattgtccttatcaactgagttaagctcacga 23118114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 19124634 - 19124684
Alignment:
Q  127 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  19124634 cagaccttgcatatattatgtattgtctttatcaactgagttaagctcacg 19124684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 38375018 - 38374956
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||| ||||||||||||||||||||||||| |||||   || |||||||||||||||||||    
T  38375018 gggtttgaactccagaccttgcatatattatgcattgtccctaccaactaagttaagctcacg 38374956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 11269742 - 11269693
Alignment:
Q  128 agaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  11269742 agaccttgcatatattatgtattgtccttaccaactaagttaagctcacg 11269693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 7371562 - 7371610
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  7371562 gaccttgcatatattatgtattgtccttatcaactgagttaagctcacg 7371610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 31041357 - 31041433
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||| |||||||||||| ||||||||||||||||||||  ||||| | || ||| | |||||||||||||| ||||    
T  31041357 ggtggctagggtttaaaccccagaccttgcatatattatacattgtttctaccaaatgagttaagctcacgaggaca 31041433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 29908116 - 29908049
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||| |||||| |||||||||||||||||| |||||  ||| ||||| |||||||||||||| ||||    
T  29908116 ggtttgaactccggaccttgcatatattatgcattgtccttaccaactgagttaagctcacgaagaca 29908049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 36203283 - 36203226
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagtg 186  Q
    |||||||||||||||||| |||||  ||||||||| || ||||||||||| |||||||    
T  36203283 gaccttgcatatattatgcattgtccttatcaactgagctaagctcacgaggacagtg 36203226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 11144665 - 11144713
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaact 163  Q
    ||||| |||| ||||||||||||||||||||| ||||| ||||||||||    
T  11144665 gggttcaaaccccagaccttgcatatattatgcattgtctttatcaact 11144713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 18635585 - 18635529
Alignment:
Q  121 aaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||| |||||||||| |||||||||| |||||  ||||||||| |||||||||||||    
T  18635585 aaaccccagaccttgtatatattatgcattgtccttatcaactgagttaagctcacg 18635529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 13121605 - 13121542
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||| |||| |||||||||||||||||||| |||||   || |||||||| |||||||||||    
T  13121605 gggtttgaacttcagaccttgcatatattatgcattgtccctaccaactaagctaagctcacga 13121542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 18903750 - 18903821
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||| ||||||| ||| ||||||||| ||||||||||| ||| | |||||||||| || ||| |||||||    
T  18903750 ggtggtcagggtttgaaccccagaccttacatatattatgcattatttttatcaactgagctaaactcacga 18903821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 24837494 - 24837541
Alignment:
Q  136 catatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||||||||||||||   ||||||||||||||||||||||| ||||    
T  24837494 catatattatgtattgttcatatcaactaagttaagctcacgaggaca 24837541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 34033394 - 34033331
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||| ||||||| |||||||||||| ||||| || ||  ||||||||| ||||||||||||||    
T  34033394 gggttcaaactccggaccttgcatattttatgcatggttcttatcaactgagttaagctcacga 34033331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 40847085 - 40847128
Alignment:
Q  133 ttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    |||||||||||||||||||| | |||||||| ||||||||||||    
T  40847085 ttgcatatattatgtattgtctctatcaactgagttaagctcac 40847128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 49041981 - 49042044
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||| ||| || |||||||||||||||||| ||||| | ||||||||| | |||||||||||    
T  49041981 gggtttgaaccccggaccttgcatatattatgcattgtctatatcaactaggctaagctcacga 49042044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 5534568 - 5534503
Alignment:
Q  118 tttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||| |||  ||||||||||||| ||||||  ||| ||||| |||||||||||||| ||||    
T  5534568 tttaaactcaagatattgcatatattatatattgttattaccaactgagttaagctcacgatgaca 5534503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 43183006 - 43183055
Alignment:
Q  128 agaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||||||||||||||||| ||||| |||||||||| || || |||||||    
T  43183006 agaccttgcatatattatgcattgtctttatcaactgagatatgctcacg 43183055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 6459931 - 6459987
Alignment:
Q  122 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||| |||||| ||||||||||| |||||   |||||||| ||||||||||||||    
T  6459931 aactccggaccttacatatattatgcattgtccatatcaactgagttaagctcacga 6459987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 7967636 - 7967688
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||| |||||||||||||| ||| | ||||  |||||||||||||||||||    
T  7967636 ccagactttgcatatattatgcattatctttacgaactaagttaagctcacga 7967688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 41536968 - 41536920
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||||||||||||||||||||  ||||||| | |||||| |||||||    
T  41536968 accttgcatatattatgtattgtccttatcaattgagttaaactcacga 41536920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 42316838 - 42316886
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||||||||||||||| | ||| |||| ||||| |||||||||||||    
T  42316838 gaccttgcatatattatgcactgtctttaccaactgagttaagctcacg 42316886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 53530056 - 53530008
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||| ||||||||||| ||||| ||||| |||| |||||||||||||    
T  53530056 gaccttacatatattatgcattgtttttattaactgagttaagctcacg 53530008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 7824861 - 7824800
Alignment:
Q  122 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||||||||||||||||||||||||| | |||||||| |||||| ||||||| ||||    
T  7824861 aactccagaccttgcatatattatgtattgtctatatcaactgagttaaactcacgaggaca 7824800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 9778807 - 9778867
Alignment:
Q  118 tttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||||||| |||||||| ||||||||| |||||  | ||||||| ||||||||||||||    
T  9778807 tttaaactccggaccttgcgtatattatgcattgtcctaatcaactgagttaagctcacga 9778867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 1111841 - 1111896
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaa 170  Q
    |||||| ||| |||||||||||||||||||||||||||   |||||||| ||||||    
T  1111841 gggtttgaaccccagaccttgcatatattatgtattgtccctatcaactgagttaa 1111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 2153500 - 2153538
Alignment:
Q  114 agggtttaaactccagaccttgcatatattatgtattgt 152  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  2153500 agggtttaaaccccagaccttgcatatattatgcattgt 2153538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 27185537 - 27185475
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||| ||| |||||||||||||||||||||||||||   || ||||| || |||||||||||    
T  27185537 ggtttgaaccccagaccttgcatatattatgtattgtccctaccaactgagctaagctcacga 27185475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 35863814 - 35863876
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||| ||| |||||||||||||||||||||||||||  ||| ||||| || |||||| ||||    
T  35863814 ggtttgaaccccagaccttgcatatattatgtattgtccttaccaactgagctaagcttacga 35863876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 7827562 - 7827501
Alignment:
Q  122 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||||||| ||||||||||| |||||   |||||||| |||||| ||||||| ||||    
T  7827562 aactccagaccttacatatattatgcattgtccatatcaactgagttaaactcacgaggaca 7827501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 11574302 - 11574245
Alignment:
Q  127 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacag 184  Q
    ||||||||| |||||||||| ||| |  ||||||||| |||||||||||||| |||||    
T  11574302 cagaccttgtatatattatgcattatccttatcaactgagttaagctcacgatgacag 11574245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 21245853 - 21245792
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||| ||| ||||||||| ||||||||||| |||||  ||| |||||||| ||||||||||    
T  21245853 ggtttgaaccccagaccttacatatattatgcattgtccttaccaactaagctaagctcacg 21245792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 23629813 - 23629760
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||||||||||||| ||||||   ||||||||||| ||||||||||| ||||    
T  23629813 accttgcatatattatatattgtccctatcaactaagataagctcacgatgaca 23629760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 43011368 - 43011315
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||| ||||||||||||| | |||||||| ||||| |||||||| ||||    
T  43011368 accttgcatgtattatgtattgtctatatcaactgagttaggctcacgaggaca 43011315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 44799073 - 44799118
Alignment:
Q  133 ttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||||| |||||||||||  ||||||| ||||||||||||||||    
T  44799073 ttgcatattttatgtattgttcttatcaaataagttaagctcacga 44799118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 1149082 - 1149138
Alignment:
Q  128 agaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacag 184  Q
    ||||||||||||||||||| |||||  ||| ||||| || ||||||||||| |||||    
T  1149082 agaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggacag 1149138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 5117254 - 5117206
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||| |||||||||||||||||  ||||||||| || |||||||||||    
T  5117254 accttacatatattatgtattgtccttatcaactgagctaagctcacga 5117206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 8127532 - 8127456
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||| | ||||| ||| ||| ||||||||||| ||||| |||||  ||| ||||| |||||||||||||| ||||    
T  8127532 ggtggtcatggtttgaaccccaaaccttgcatattttatgcattgtccttaccaactgagttaagctcacgaggaca 8127456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 29791822 - 29791774
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||| ||||||||||||||||| | |||||||| |||||| |||||||    
T  29791822 accttacatatattatgtattgtttctatcaactgagttaaactcacga 29791774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 38573586 - 38573634
Alignment:
Q  128 agaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    |||||||| |||||||||| |||||  ||||||||| ||||||||||||    
T  38573586 agaccttgtatatattatgcattgttcttatcaactgagttaagctcac 38573634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 49600267 - 49600327
Alignment:
Q  118 tttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||| |||||||||||||||||||| |||||| | ||  |||| || |||||||||||    
T  49600267 tttaaaccccagaccttgcatatattatttattgtctctactaactgagctaagctcacga 49600327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 51250233 - 51250301
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||| |||| ||| |||||||||||||||  |||||  ||| ||||| |||||||||||||| ||||    
T  51250233 gggtttgaacttcaggccttgcatatattatacattgtccttaccaactgagttaagctcacgaggaca 51250301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 3209 - 3139
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||| |||| ||||| || |||||||||||    
T  3209 ggtggttcgggtttgaactc-agaccttgcatatattatgtattgtctttaccaactgagctaagctcacga 3139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 48007547 - 48007614
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgac 182  Q
    ||||| |||||||||||||||||||||||||| |||||  ||| ||||| ||||||||||||| ||||    
T  48007547 gggttcaaactccagaccttgcatatattatgcattgtcattaccaactgagttaagctcacggcgac 48007614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 45979163 - 45979111
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||| |||||    
T  45979163 ccagaccttgcatatattatgtattgtctttatcaaatgagttaagcccacga 45979111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 7481275 - 7481226
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctca 175  Q
    |||||||||||||| |||||||||||| |||| ||||| |||||||||||    
T  7481275 ccagaccttgcatacattatgtattgtctttaccaactgagttaagctca 7481226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 5458082 - 5458134
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||||||| |||||  ||||||||| || |||||||||||    
T  5458082 ccagaccttgcatatattatgcattgttcttatcaactgagctaagctcacga 5458134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 32862081 - 32862137
Alignment:
Q  114 agggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaa 170  Q
    ||||||| ||| ||||| ||||||||||||||||||||| | || ||||||||||||    
T  32862081 agggtttgaacgccagatcttgcatatattatgtattgtctataccaactaagttaa 32862137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 429186 - 429241
Alignment:
Q  123 actccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||| ||||||||||||||||||||| |   |||||||| ||||||||||||||    
T  429186 actccaaaccttgcatatattatgtattatccatatcaactgagttaagctcacga 429241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 6384914 - 6384851
Alignment:
Q  113 tagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    |||||||  ||| ||||||||||||||||||||| |||||  |||| |||| ||||||||||||    
T  6384914 tagggttcgaaccccagaccttgcatatattatgcattgtccttattaactgagttaagctcac 6384851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 32315269 - 32315222
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||||||||||||||||| |||  ||||||||| |||||||||||||    
T  32315269 accttgcatatattatgtaatgtccttatcaactgagttaagctcacg 32315222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 38911345 - 38911298
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||||||||||||||  ||||| |||||||||| |||||||||||||    
T  38911345 accttgcatatattatacattgtctttatcaactgagttaagctcacg 38911298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 48527244 - 48527189
Alignment:
Q  122 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||| |||||||||||||||||| |||||  ||||||||| || ||||||||||    
T  48527244 aactccggaccttgcatatattatgcattgtccttatcaactgagataagctcacg 48527189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 1627942 - 1627996
Alignment:
Q  122 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    ||||||||||||||||||||| ||| ||||| |||  ||||| ||||||||||||    
T  1627942 aactccagaccttgcatatatcatgcattgtctttgccaactgagttaagctcac 1627996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 4044659 - 4044605
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagtta 169  Q
    ||||||||||| || | ||||||| ||||||||||||||| |||||||| |||||    
T  4044659 gggtttaaactgcatatcttgcatgtattatgtattgtatctatcaactgagtta 4044605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 5041398 - 5041332
Alignment:
Q  117 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||| ||| ||||||||||||||||||||| |||||   || ||||| |||||||||||||| ||||    
T  5041398 gtttgaaccccagaccttgcatatattatgcattgtccataccaactcagttaagctcacgaggaca 5041332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 35165582 - 35165532
Alignment:
Q  127 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||||| |||||||||||||||||  ||||||||| |||||| ||||||    
T  35165582 cagaccttacatatattatgtattgtcgttatcaactgagttaaactcacg 35165532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 37864475 - 37864425
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    ||||||||||||||||||||| |||||| ||| ||||| || |||||||||    
T  37864475 ccagaccttgcatatattatgcattgtacttaccaactgagctaagctcac 37864425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 41860259 - 41860329
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagtg 186  Q
    ||||||||| ||| | |||  |||||||||| ||||| |||||||| |||||||||||||||  |||||||    
T  41860259 ggtttaaaccccaaatcttatatatattatgcattgtctttatcaattaagttaagctcacggggacagtg 41860329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 3584250 - 3584197
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||||||||||| |||||  ||| |||||||||||||||| ||| ||||    
T  3584250 accttgcatatattatgcattgtccttaccaactaagttaagctcgcgaggaca 3584197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 3671885 - 3671848
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgt 152  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  3671885 gggtttgaactccagaccttgcatatattatgcattgt 3671848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 8879762 - 8879810
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||| ||||| | || ||||| ||||||||||||||    
T  8879762 accttgcatatattatgcattgtctataccaactgagttaagctcacga 8879810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 10029842 - 10029886
Alignment:
Q  132 cttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    ||||||||||||||||||||| |||| ||| |||||||| |||||    
T  10029842 cttgcatatattatgtattgtctttaccaattaagttaaactcac 10029886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 16577861 - 16577897
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgt 152  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  16577861 ggtttgaaccccagaccttgcatatattatgtattgt 16577897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 16587801 - 16587765
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgt 152  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  16587801 ggtttgaaccccagaccttgcatatattatgtattgt 16587765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 21554948 - 21555004
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagt 185  Q
    |||||||||||||||| | ||| |   || |||||||||||||||||||||||||||    
T  21554948 gaccttgcatatattaagcattatccctaccaactaagttaagctcacgacgacagt 21555004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 30857317 - 30857241
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||| |||||| ||||| | ||||||||||||||||| |||||   || |||||||| ||| ||||||| ||||    
T  30857317 ggtggttggggtttgaactcaaaaccttgcatatattatgcattgtccataccaactaagctaaactcacgaggaca 30857241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 45425499 - 45425459
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaa 170  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  45425499 accttgcatatattatgcattgtctttatcaactgagttaa 45425459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 47195574 - 47195614
Alignment:
Q  137 atatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||||||||||||||||||| |||  |||||||||||||    
T  47195574 atatattatgtattgtatttattaaccgagttaagctcacg 47195614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 7081646 - 7081717
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||| |||||| |||   ||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  7081646 ggtggtttgggtttcaaccttagaccttgcatatattatgtattgtctttatcaactgagctaagctcacga 7081717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 8810708 - 8810638
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||| |||| ||||| || |||||||||||    
T  8810708 ggtggttcgggtttgaactc-agaccttgcatatattatgtattgtctttaccaactgagctaagctcacga 8810638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 12412326 - 12412270
Alignment:
Q  127 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||||||||||||||||| ||||| | || |||||||||||||||||||| ||||    
T  12412326 cagaccttgcatatattatgcattgtctctaccaactaagttaagctcacgaggaca 12412270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 13496177 - 13496114
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||| |||||| |||||||||||||||||| |||||   |||||||| ||||||||||||||    
T  13496177 gggtttgaactccggaccttgcatatattatgcattgttcatatcaactgagttaagctcacga 13496114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 334190 - 334142
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctc 174  Q
    ||||||||||||||||||||| ||||| |||||||||| || |||||||    
T  334190 ccagaccttgcatatattatgcattgtctttatcaactgagctaagctc 334142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 4450309 - 4450261
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||||||||||||||| ||||| |||||||||| || ||||||||||    
T  4450309 gaccttgcatatattatgcattgtctttatcaactgagctaagctcacg 4450261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 21941459 - 21941519
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctca 175  Q
    |||||||||||||||||||| ||||||||| | |||||   |||||||| |||||||||||    
T  21941459 gggtttaaactccagaccttacatatattacgcattgtccctatcaactgagttaagctca 21941519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 28898917 - 28898849
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||| |||||| |||||| ||||||||||| |||||  ||| ||||||||||||| |||||| ||||    
T  28898917 gggtttgaactccggacctttcatatattatgcattgtccttaccaactaagttaagatcacgaggaca 28898849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 29335575 - 29335643
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||||  |||||||||||||||||||| ||||| | ||  |||| |||||||||||||| ||||    
T  29335575 gggtttaaacatcagaccttgcatatattatgcattgtttatactaactgagttaagctcacgaggaca 29335643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 5040847 - 5040901
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||||||||||||| |||| |||| ||||| || ||||||||||| ||||    
T  5040847 gaccttgcatatattatgttttgtctttaccaactgagctaagctcacgatgaca 5040901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 15291705 - 15291763
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagtgat 188  Q
    ||||||||||||||||  |||||  ||| |||||||||||||||||||| |||| ||||    
T  15291705 accttgcatatattattcattgtccttaccaactaagttaagctcacgaggacaatgat 15291763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 17151296 - 17151234
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||| ||| |||||||||||||||||||||||||||   || ||||| || |||||||||||    
T  17151296 ggtttgaaccccagaccttgcatatattatgtattgtcactaccaacttagctaagctcacga 17151234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 404206 - 404161
Alignment:
Q  133 ttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||||||||||| |||||  ||| ||||||||||||||||||||    
T  404206 ttgcatatattatgcattgtccttaccaactaagttaagctcacga 404161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 788927 - 788858
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacag 184  Q
    |||||| ||||||  ||||||||||||||||| |||||  ||| ||||| || ||||||||||| |||||    
T  788927 gggtttgaactccgaaccttgcatatattatgcattgtccttaccaactgagataagctcacgaggacag 788858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 2473664 - 2473627
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgt 152  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  2473664 gggtttaaaccccataccttgcatatattatgtattgt 2473627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 6470637 - 6470678
Alignment:
Q  136 catatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||||||||| ||||| |||||||||| |||||||||||||    
T  6470637 catatattatgcattgtctttatcaactgagttaagctcacg 6470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 8916481 - 8916542
Alignment:
Q  122 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||| ||||||||||||||||||||||||   || ||||| |||| ||||||||| ||||    
T  8916481 aactccggaccttgcatatattatgtattgtccctaccaactgagtttagctcacgaggaca 8916542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 18256930 - 18256881
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||||||||||||||| |||||  ||||||||| || |||||||||||    
T  18256930 gaccttgcatatattatgcattgtccttatcaactgagctaagctcacga 18256881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 31140827 - 31140884
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagtga 187  Q
    ||||||||||||||||  ||| | ||||||| || |||||||||||||| ||||||||    
T  31140827 accttgcatatattatacattatctttatcagctgagttaagctcacgaggacagtga 31140884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 331901 - 331949
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||| ||||| | || ||||| ||||||||||||||    
T  331901 accttgcatatattatgcattgtctctaccaactgagttaagctcacga 331949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 1535371 - 1535327
Alignment:
Q  108 gtggttagggtttaaactccagaccttgcatatattatgtattgt 152  Q
    |||||||||||||||||| ||  |||||||||||||||| |||||    
T  1535371 gtggttagggtttaaacttcaatccttgcatatattatgcattgt 1535327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 2617206 - 2617266
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    |||||||||  || ||||| ||||||||||| ||||| | || ||||||||||||||||||    
T  2617206 ggtttaaacctcaaaccttacatatattatgcattgtctctaccaactaagttaagctcac 2617266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 8381208 - 8381256
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||||||||| ||||| ||||| |||| ||||| |||||||||||||    
T  8381208 gaccttgcatatgttatgcattgtctttaccaactgagttaagctcacg 8381256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 12602075 - 12602023
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||||||||||||||||||||||||   || |||||||| ||| |||||||    
T  12602075 ccagaccttgcatatattatgtattgtccctaccaactaagctaaactcacga 12602023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 17329979 - 17330015
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgt 152  Q
    |||||||||  ||||||||||||||||||||||||||    
T  17329979 ggtttaaacctcagaccttgcatatattatgtattgt 17330015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 21599018 - 21598962
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaag 171  Q
    |||||||||| ||  |||||||||||||||||||||||   || |||||||||||||    
T  21599018 gggtttaaaccccgtaccttgcatatattatgtattgttcataccaactaagttaag 21598962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 29506874 - 29506825
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||||||||||||||||||||| | || ||||||||||||||||||||    
T  29506874 gaccttgcatatattatgtattgtctataccaactaagttaagctcacga 29506825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 31979427 - 31979498
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||| |||||| ||||||| |||||||||||| ||| |||||| | || ||||||||||||| ||||||    
T  31979427 ggtggttggggtttgaactccaaaccttgcatataatatatattgtctctaccaactaagttaagttcacga 31979498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 563260 - 563199
Alignment:
Q  117 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||| |||||| ||||||||||||||||||| ||||  ||||||||| || |||||||||||    
T  563260 gtttgaactccggaccttgcatatattatgttttgtccttatcaactgagctaagctcacga 563199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 32950762 - 32950823
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||| |||||| |||||||||||||||||| ||||| | || ||||| |||||||||||||    
T  32950762 ggtttgaactccggaccttgcatatattatgcattgtttataccaactgagttaagctcacg 32950823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 34848525 - 34848476
Alignment:
Q  127 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||| |||||    
T  34848525 cagaccttgcatatattatgaattgtctttgtcaactaagttaaactcac 34848476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 42045372 - 42045440
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||| ||||||||||||||||||||||||| |||||   || ||||| || ||||||||||| ||||    
T  42045372 gggtttgaactccagaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggaca 42045440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 42440140 - 42440184
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattg 151  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||||    
T  42440140 ggtggttagggtttgaactccagaccttacatatattatgcattg 42440184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 44221037 - 44220985
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||||||| ||||||| || ||||| | |||||||||||||||||||||||    
T  44221037 ccagaccttgtatatattgtgcattgtctctatcaactaagttaagctcacga 44220985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 17651379 - 17651442
Alignment:
Q  114 agggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||||| |||  |||||||||||||| |||||||||||   |||||||| |||||||||||||    
T  17651379 agggtttgaacctcagaccttgcatattttatgtattgtccatatcaacttagttaagctcacg 17651442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 26705649 - 26705598
Alignment:
Q  127 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||||||||||||  ||| |||||||| |||| ||||||    
T  26705649 cagaccttgcatatattatgtattgttcttaccaactaagctaagttcacga 26705598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 12214043 - 12213993
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    |||||||||||||||||||||||||||   |||||||| || |||||||||    
T  12214043 ccagaccttgcatatattatgtattgttcctatcaactgagctaagctcac 12213993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 16033452 - 16033518
Alignment:
Q  117 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||| ||| ||||||||||||||||||||| |||||   |||||||| ||| |||||||||| ||||    
T  16033452 gtttgaaccccagaccttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 16033518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 23405372 - 23405418
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctca 175  Q
    |||||||||||||||||| |||||  ||| |||||||||||||||||    
T  23405372 gaccttgcatatattatgcattgtccttaacaactaagttaagctca 23405418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 30279638 - 30279688
Alignment:
Q  133 ttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||||||||||||||||||  |||||||| || ||||||||||| ||||    
T  30279638 ttgcatatattatgtattgtacctatcaactgagctaagctcacgaggaca 30279688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 43843937 - 43843891
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    ||||||||||||||||| |||||  ||| ||||||||||||||||||    
T  43843937 accttgcatatattatgcattgtccttaccaactaagttaagctcac 43843891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 28039872 - 28039921
Alignment:
Q  127 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    |||||||||||||||||||| |||||  ||| ||||| ||||||||||||    
T  28039872 cagaccttgcatatattatgcattgtccttaccaactgagttaagctcac 28039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 29987104 - 29987149
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattgt 152  Q
    ||||||| |||||  ||||||||||||||||||||||||| |||||    
T  29987104 ggtggttggggttcgaactccagaccttgcatatattatgcattgt 29987149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 30548106 - 30548151
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctca 175  Q
    ||||||||||||||||| |||||  ||| |||||||||||||||||    
T  30548106 accttgcatatattatgcattgtccttaccaactaagttaagctca 30548151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 47835732 - 47835777
Alignment:
Q  132 cttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||| |||||||||||||||| |||||||||| |||||| ||||||    
T  47835732 cttgtatatattatgtattgtttttatcaactgagttaaactcacg 47835777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 49875613 - 49875662
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||||||||||||||| |||||  ||| ||||| ||||||||||||||    
T  49875613 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacga 49875662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 52267814 - 52267757
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||||||||| ||||| |||||  ||| ||||| |||||||||||||| ||||    
T  52267814 ccagaccttgcatattttatgcattgtccttaccaactgagttaagctcacgaggaca 52267757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 1761506 - 1761454
Alignment:
Q  132 cttgcatatattatgtatt-gtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||||||||| ||| || |||||||||||||||||||| |||| ||||    
T  1761506 cttgcatatattatgaatttgtctttatcaactaagttaagcttacgaggaca 1761454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 4859133 - 4859085
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctc 174  Q
    ||||||||| ||||||||||||||| |  ||||||||| ||||||||||    
T  4859133 ccagaccttacatatattatgtattattcttatcaactgagttaagctc 4859085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 10654461 - 10654509
Alignment:
Q  129 gaccttgcatatattatgtattgt-atttatcaactaagttaagctcac 176  Q
    |||||||||||||||||| |||||  |||||||||| ||||||||||||    
T  10654461 gaccttgcatatattatgcattgtcttttatcaactgagttaagctcac 10654509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 11681284 - 11681244
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatt 155  Q
    |||||| ||| ||||||||||||||||||||| ||||||||    
T  11681284 gggtttgaaccccagaccttgcatatattatgcattgtatt 11681244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 16967209 - 16967257
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||| |||||   ||||||||||| |||||||||||    
T  16967209 accttgcatatattatgcattgtccatatcaactaagctaagctcacga 16967257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 19620623 - 19620575
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||||||||||||||||||||||  ||| ||||| || ||||||||||    
T  19620623 gaccttgcatatattatgtattgtccttaccaactgagctaagctcacg 19620575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 24978290 - 24978242
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||||||| | | || ||||| ||||||||||||||    
T  24978290 accttgcatatattatgtattatctataccaactgagttaagctcacga 24978242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 31401667 - 31401715
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||||||||||||||| ||||| ||| |||||| |||||| ||||||    
T  31401667 gaccttgcatatattatgcattgtttttgtcaactgagttaaactcacg 31401715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 47070908 - 47070872
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgt 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  47070908 ggtttaaactccgaaccttgcatatattatgtattgt 47070872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 47071972 - 47072020
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||||||||||||||||||||||  ||| ||| | |||||||||||||    
T  47071972 gaccttgcatatattatgtattgttcttaccaattgagttaagctcacg 47072020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 52441511 - 52441579
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||| |||| || |||||||||||||||||| ||||| | || ||||| || ||||||||||| ||||    
T  52441511 gggttcaaacgccggaccttgcatatattatgcattgtctataccaactgagctaagctcacgaggaca 52441579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 17062354 - 17062402
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  17062354 accttgcatatattatgtattgtctatatcaactgagttaagctcacga 17062402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 17586004 - 17585956
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  17586004 accttgcatatattatgtattgtctatatcaactgagttaagctcacga 17585956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 29546962 - 29546895
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctc 174  Q
    |||||| ||||||| ||| |||||||||||||||||||| ||||||   |||||||| ||||||||||    
T  29546962 ggtggtcagggtttgaaccccagaccttgcatatattatctattgtccctatcaactgagttaagctc 29546895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 6248355 - 6248301
Alignment:
Q  122 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    |||||| ||||||||||||||||||||| |||| |||||||| |||||| |||||    
T  6248355 aactccggaccttgcatatattatgtatcgtatatatcaactgagttaaactcac 6248301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 1877676 - 1877725
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||||||||||||||| ||||| | |||||||| ||||||||||||||    
T  1877676 gaccttgcatatattatgcattgtctatatcaactgagttaagctcacga 1877725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 29376962 - 29376894
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||| ||||||||||||||||||||||| | |||||   || ||||| |||||||||||||| ||||    
T  29376962 gggtttgaactccagaccttgcatatattacgcattgtccataccaactgagttaagctcacgaggaca 29376894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 29924917 - 29924985
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||||||| ||  ||||||||||||||||| |||||  ||| ||||||||||||| |||||| ||||    
T  29924917 gggtttaaaccccgaaccttgcatatattatgcattgttcttaacaactaagttaagttcacgaggaca 29924985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 2181188 - 2181126
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||| ||||||||| ||||||||||| |||||   || ||| ||||||||||||||||    
T  2181188 ggtttaaaccccagaccttacatatattatgcattgttcctaccaattaagttaagctcacga 2181126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 9014684 - 9014714
Alignment:
Q  122 aactccagaccttgcatatattatgtattgt 152  Q
    |||||||||||||||||||||||||||||||    
T  9014684 aactccagaccttgcatatattatgtattgt 9014714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 27191817 - 27191751
Alignment:
Q  117 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||| |||| |||||||||||||||||||| |||||  ||| ||||| || ||||||||||| ||||    
T  27191817 gtttgaacttcagaccttgcatatattatgaattgttcttaccaactgagctaagctcacgaggaca 27191751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 27718896 - 27718966
Alignment:
Q  117 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagtga 187  Q
    |||| |||||| |||||||||||||||||| |||||   |||||||| || ||||||||||| ||| ||||    
T  27718896 gtttgaactccggaccttgcatatattatgcattgtccatatcaactgagctaagctcacgaggaccgtga 27718966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 29293236 - 29293170
Alignment:
Q  117 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||| |||||| |||||| |||||||||| |||||| | ||| |||| |||||||||||||| ||||    
T  29293236 gtttgaactccggaccttacatatattatatattgtctatattaactgagttaagctcacgaggaca 29293170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 32223880 - 32223942
Alignment:
Q  116 ggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||| |||||||||| |||||||||||||| ||||| | |||||||| |  |||||||||||    
T  32223880 ggtttgaactccagactttgcatatattatgcattgtctctatcaactgaactaagctcacga 32223942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 36392837 - 36392883
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    |||||||||||| ||| |||||| |||||||||| ||||||||||||    
T  36392837 accttgcatatactatctattgtctttatcaactgagttaagctcac 36392883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 39821945 - 39821875
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagt 185  Q
    |||||| ||| ||||||||||||||||||||| |||||   || ||||| || ||||||||||| ||||||    
T  39821945 gggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggacagt 39821875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 10656474 - 10656441
Alignment:
Q  117 gtttaaactccagaccttgcatatattatgtatt 150  Q
    |||| |||||||||||||||||||||||||||||    
T  10656474 gtttgaactccagaccttgcatatattatgtatt 10656441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 11771754 - 11771705
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||||||||||||||||||||| | |||||||| || |||||| ||||    
T  11771754 gaccttgcatatattatgtattgtctctatcaactgagctaagcttacga 11771705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 30071531 - 30071580
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacgac 179  Q
    |||||| |||||||||| |||||  ||||||||||||||||| |||||||    
T  30071531 accttgtatatattatgcattgttcttatcaactaagttaagttcacgac 30071580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 36781469 - 36781400
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacag 184  Q
    |||||||||| || ||| ||||||||||||||||||||  ||| ||||| || || |||||||| |||||    
T  36781469 gggtttaaaccccggactttgcatatattatgtattgtccttaccaactgagctaggctcacgatgacag 36781400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 39433460 - 39433403
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||||||||| |||||||||||   |||||||| || ||||||||||| ||||    
T  39433460 ccagaccttgcatattttatgtattgttcatatcaactgagctaagctcacgaggaca 39433403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 6394757 - 6394825
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||||||| ||| ||||||||||||||| ||||   |||||||| || |||| |||||| ||||    
T  6394757 gggtttaaactccggacattgcatatattatgttttgtccctatcaactgaggtaagttcacgaggaca 6394825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 9019564 - 9019624
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctca 175  Q
    ||||| |||| | ||||||||||||||||||| ||||| |||| |||||  ||||||||||    
T  9019564 gggttcaaacccaagaccttgcatatattatgcattgtctttaccaactgcgttaagctca 9019624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 28084328 - 28084280
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||  ||||| | |||||||| ||||||||||||||    
T  28084328 accttgcatatattattcattgtctctatcaactgagttaagctcacga 28084280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 16204823 - 16204878
Alignment:
Q  121 aaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    |||| ||||||||||||||||||||| |||||  ||||||||| ||||||||||||    
T  16204823 aaaccccagaccttgcatatattatgcattgtccttatcaactgagttaagctcac 16204878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 34977265 - 34977202
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||| |||||||||||||||||| |||||   || ||||| ||||||||||||||    
T  34977265 gggtttaaactccggaccttgcatatattatgcattgtccataccaactgagttaagctcacga 34977202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 40967386 - 40967434
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||| |||||  ||||||||| ||||||||||||||    
T  40967386 accttgcatatattatgcattgtccttatcaactgagttaagctcacga 40967434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 10076916 - 10076873
Alignment:
Q  134 tgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||    
T  10076916 tgcatatattatgtattgtctttatcagctaagttaagttcacg 10076873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 37320532 - 37320579
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    ||||||||||||||||| ||||| |||| ||||| |||||||||||||    
T  37320532 accttgcatatattatgcattgtctttaccaactgagttaagctcacg 37320579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 42200736 - 42200693
Alignment:
Q  127 cagaccttgcatatattatgtattgtatttatcaactaagttaa 170  Q
    |||||||||||||||||||||||||| |||| ||||| ||||||    
T  42200736 cagaccttgcatatattatgtattgtctttaccaactgagttaa 42200693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 12599876 - 12599938
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgacagtgat 188  Q
    |||||||||||||||||||||||||||   ||  |||| ||||||||| |||| |||||||||    
T  12599876 ccagaccttgcatatattatgtattgtccatactaactgagttaagcttacgaagacagtgat 12599938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 24520650 - 24520700
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcac 176  Q
    ||||||| ||||||||||||| ||||| |||| |||||||| |||||||||    
T  24520650 ccagaccatgcatatattatgcattgtctttaccaactaagctaagctcac 24520700  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 3904277 - 3904208
Alignment:
Q  101 tttttgggtggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaa 170  Q
    ||||| |||| | ||||||| ||| ||||||||| ||||||||||| |||||   |||||||||||||||    
T  3904277 tttttaggtgatcagggtttgaaccccagaccttacatatattatgcattgtccctatcaactaagttaa 3904208  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 23407010 - 23407055
Alignment:
Q  107 ggtggttagggtttaaactccagaccttgcatatattatgtattgt 152  Q
    |||||| ||||||| ||| ||||||||||||||||||||| |||||    
T  23407010 ggtggtcagggtttgaaccccagaccttgcatatattatgcattgt 23407055  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 33064040 - 33063979
Alignment:
Q  122 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||| |||||||||||||||||| |||||   |||||||| || ||||||||||| ||||    
T  33064040 aactccggaccttgcatatattatgcattgtccatatcaactgagctaagctcacgaggaca 33063979  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 2257021 - 2256969
Alignment:
Q  126 ccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||||||| |||||   || ||||| ||||||||||||||    
T  2257021 ccagaccttgcatatattatgcattgtccataccaactgagttaagctcacga 2256969  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 5676784 - 5676732
Alignment:
Q  131 ccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||||||||||||| |||||  ||| ||||| |||||||||||||| ||||    
T  5676784 ccttgcatatattatgcattgtcattaccaactgagttaagctcacgaggaca 5676732  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 7206186 - 7206118
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    ||||||||||  | |||||||||||||||||| ||||| | || ||||| || ||||||||||| ||||    
T  7206186 gggtttaaacctcggaccttgcatatattatgcattgtctctaccaactgagctaagctcacgaggaca 7206118  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 7537164 - 7537108
Alignment:
Q  122 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||||| |||||||||||||||||| |||||   |||||||| |||||| |||||||    
T  7537164 aactccggaccttgcatatattatgcattgttcctatcaactgagttaatctcacga 7537108  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 10195661 - 10195725
Alignment:
Q  114 agggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||| ||||||||| ||||||||||||||| ||| |   |||||||| || |||||||||||    
T  10195661 agggtttgaactccagatcttgcatatattatgcattatccatatcaactgagctaagctcacga 10195725  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 20990919 - 20990967
Alignment:
Q  130 accttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||| ||||| ||||| | || ||||||||||||||||||||    
T  20990919 accttgcatattttatgcattgtctataacaactaagttaagctcacga 20990967  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 29896294 - 29896362
Alignment:
Q  115 gggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||| ||| ||| ||||||||||||||||| ||||| | |||||||| | |||| ||||||| ||||    
T  29896294 gggtttgaaccccaaaccttgcatatattatgcattgtttctatcaactgaattaaactcacgaggaca 29896362  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 35372942 - 35373002
Alignment:
Q  118 tttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||| |||||||||||||||||||| ||||||  ||| ||||| || || ||||||||    
T  35372942 tttaaaccccagaccttgcatatattatatattgtccttaccaactgagctatgctcacga 35373002  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 40895922 - 40895858
Alignment:
Q  109 tggttagggtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagct 173  Q
    |||| ||||||||||| ||  ||||| ||||||||||| ||||| | || |||||||||||||||    
T  40895922 tggtcagggtttaaaccccgaaccttccatatattatgcattgtttctaccaactaagttaagct 40895858  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 42475122 - 42475178
Alignment:
Q  127 cagaccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||||||||||| ||||| ||||| | || ||||| |||||||||||||| ||||    
T  42475122 cagaccttgcatattttatgcattgtttataccaactgagttaagctcacgaggaca 42475178  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 44694733 - 44694681
Alignment:
Q  131 ccttgcatatattatgtattgtatttatcaactaagttaagctcacgacgaca 183  Q
    |||||||||||||||| ||||| | |||||||| ||||||| |||||| ||||    
T  44694733 ccttgcatatattatgcattgtctatatcaactgagttaagttcacgaggaca 44694681  T

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Target: scaffold0088 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 48075 - 48019
Alignment:
Q  122 aactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    ||||||||||||||||||||||||| ||| |  ||||||||| |||||| |||||||    
T  48075 aactccagaccttgcatatattatgcattatgcttatcaactgagttaaactcacga 48019  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 99096 - 99035
Alignment:
Q  117 gtttaaactccagaccttgcatatattatgtattgtatttatcaactaagttaagctcacga 178  Q
    |||| ||| ||||||||||||||||||||| |||||   |||||||| ||| ||||||||||    
T  99096 gtttgaaccccagaccttgcatatattatgcattgtccctatcaactgagtcaagctcacga 99035  T

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Target: scaffold0238 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 25436 - 25388
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||||||||||||||| |||||  ||| ||||| |||||||||||||    
T  25436 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacg 25388  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 34902 - 34950
Alignment:
Q  129 gaccttgcatatattatgtattgtatttatcaactaagttaagctcacg 177  Q
    |||||||||||||||||| |||||  ||| ||||| |||||||||||||    
T  34902 gaccttgcatatattatgcattgtccttaccaactgagttaagctcacg 34950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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