View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18097_high_4 (Length: 542)
Name: NF18097_high_4
Description: NF18097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18097_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 389 - 531
Target Start/End: Complemental strand, 30970364 - 30970222
Alignment:
| Q |
389 |
aaaacctccactgctatttatgttgagctttgaggtctcttgaatatggtcttaaaaccttttgtgatcagggtattatttcccttcttgtggaatgtga |
488 |
Q |
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| T |
30970364 |
aaaacctccaccgctatttatgttgagctttgaggtctctttaatatggtcttaaaaccttttgggatcagggtattatttcccttcttgtggaatgtga |
30970265 |
T |
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| Q |
489 |
ttcttgggtctttatacaaattgttcagctcacttcatctcac |
531 |
Q |
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| T |
30970264 |
ttcttgggtctttatacaaattgttcaactcacttcatctcac |
30970222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 112 - 360
Target Start/End: Complemental strand, 30970845 - 30970598
Alignment:
| Q |
112 |
gttatagagttagttttataccttgaaagaatgaatctccaagtttattttttatgaacatattccataagatgtttactatcaatttaaattgacnnnn |
211 |
Q |
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| T |
30970845 |
gttatagagttaattttatactttgaaagaatgaatcttcgagtttactttttatgaacttattccataagatgtttactatcaatttaaattgac-aaa |
30970747 |
T |
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| Q |
212 |
nnntacttattaaatannnnnnnnaaattcagaaaatgagatctcagtcgannnnnnngagaaaacaatctcacaacnnnnnnnngttgagnnnnnnnnn |
311 |
Q |
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| T |
30970746 |
aaatacttattaaatatttttttaaaattcagaaaatgagatctcagtcgatttttttgagaaaacaatctcacaactttttcttgttgagaaaaaaaat |
30970647 |
T |
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| Q |
312 |
ntatctatcaatttaaattgagaaaacaaatatcacaaatttaaaaatc |
360 |
Q |
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| T |
30970646 |
atatctatcaatttaaattgagaaaacaaatatcacaaatttaaaaatc |
30970598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 30971163 - 30971055
Alignment:
| Q |
20 |
gggggaggctaaaaaattagaattcatttttcaacatatatgatttattaattctaaagtaaaatttagaagttatgatcacataagtattagttataga |
119 |
Q |
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| T |
30971163 |
ggggcaggcaaaaaaattagaatccatttttcaacatatatgatttattaattctaaagtaaaatttagaagttaagatcacataagtattagttataga |
30971064 |
T |
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| Q |
120 |
gttagtttt |
128 |
Q |
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|||| |||| |
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| T |
30971063 |
gttaatttt |
30971055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 30970593 - 30970536
Alignment:
| Q |
349 |
aatttaaaaatcccataataagaattttgtgttgtaat-ttaaaacctccactgctat |
405 |
Q |
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| T |
30970593 |
aatttaaaaatcccataataagaatcttgtgttgtaatattaaaacctccactcctat |
30970536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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