View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18097_low_1 (Length: 649)
Name: NF18097_low_1
Description: NF18097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18097_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-132; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 359 - 614
Target Start/End: Original strand, 25361580 - 25361835
Alignment:
| Q |
359 |
ctacaatatccaatagagatgttacataaagtctattattgagtaactacgaattgaaataaaatgaagacaaacaggctcacatcagatggtacaggat |
458 |
Q |
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| T |
25361580 |
ctacaatatccaatagagatgttacataaagtctattattgagtaactacgaattgaaataaaatgaagacaaacaggctcacatcagatggtacaggat |
25361679 |
T |
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| Q |
459 |
ccgcagttgttggtacaagtttcatcgtagaaattggctcagcaaatgtgtttgtagctaaaatatctcgatccagaggctctacatcagcacgcacttc |
558 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25361680 |
ccgtagttgttggtacaagtttcatcgtagaaattggctcagcaaatgtgtttgtagctaaaatatctcgatccagaggctctacatcagcacgcacttc |
25361779 |
T |
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| Q |
559 |
ttgctctaattcttccgtcttcttagtagtactacgtgcatggagtcgattatttg |
614 |
Q |
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| T |
25361780 |
ttgctctaatccttccgtcttcttagaagtactgcgtgcatggagtcgattatttg |
25361835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 37 - 310
Target Start/End: Original strand, 25361248 - 25361531
Alignment:
| Q |
37 |
gcagttattggttttatagcacggtatcaaaatacatatcataca-agtcctaaacaaagcatgtcgaatggattttggtcaaacttttggaaatttcgt |
135 |
Q |
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| T |
25361248 |
gcagttattgcttttataccataatatcaaaatacatatcataaagagtcctaaacaaagcatgaggaatgattttttgtcaaactcttggaaatttcat |
25361347 |
T |
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| Q |
136 |
cgcaacttctcaaggcttgcatgcaacttccaattttgggatcatgtgattt---------ttcttcttcttcatcatcatcataatcattatcattaat |
226 |
Q |
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| T |
25361348 |
cgcaacttcttaaggcatgcatacaacttccaattttctgatcatataatttgccgtcttcttcttcttctgcatcatcatcgtaatcattatcattaat |
25361447 |
T |
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| Q |
227 |
cacgattggactggttgcatctctcccaggaccatcatatactcttttgaaggtcaaggttctcaatctatcactagtccttac |
310 |
Q |
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| T |
25361448 |
cacgattggactgcttgcatctctcccaggaccatcatatgatcttttgaaggtcaaggttctcaatctatcactagtccttac |
25361531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 39 - 307
Target Start/End: Original strand, 25349384 - 25349651
Alignment:
| Q |
39 |
agttattggttttatagcacggtatcaaaatacatatcatacaagtcctaaacaaagcatgtcgaatggattttggtcaaacttttggaaatttcgtcgc |
138 |
Q |
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| T |
25349384 |
agttattggttttataccaccaaatcaaaatacatatcataaaagtcctaacgaaagcatgatgaatctatttttgtcaaacttctggaaattccatccg |
25349483 |
T |
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| Q |
139 |
aacttctcaaggcttgcatgcaacttccaattttgggatcatgtgatttttcttcttcttcatcatcatcataatcattatcattaatcacgattggact |
238 |
Q |
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||| ||| |||| ||||| ||||||||||| ||||||||||| | ||| ||| ||||| ||||||||||||||||||| ||| |||||||| |||||||| |
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| T |
25349484 |
aacctcttaaggtttgcacgcaacttccaactttgggatcatataattcttcgtcttcatcatcatcatcataatcatcatcgttaatcacaattggact |
25349583 |
T |
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| Q |
239 |
ggttgcatctctcccaggaccatcatatactcttttgaaggtcaaggttctcaatctatcactagtcct |
307 |
Q |
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| T |
25349584 |
agttgcatctctccca-gaccatcatatacttttttgaaggccaaggttctcaatctattactagtcct |
25349651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 73 - 307
Target Start/End: Original strand, 25351956 - 25352190
Alignment:
| Q |
73 |
tatcatacaagtcctaaacaaagcatgtcgaatggattttggtcaaacttttggaaatttcgtcgcaacttctcaaggcttgcatgcaacttccaatttt |
172 |
Q |
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||||||| ||||||||| ||||||| | ||||||| ||| |||| |||||||||||| | || |||||||| ||||| |||||||||||||||| ||| |
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| T |
25351956 |
tatcataaaagtcctaatcaaagcaagaggaatggaattttttcaagcttttggaaattccatcccaacttcttaaggcatgcatgcaacttccaacttt |
25352055 |
T |
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| Q |
173 |
gggatcatgtgatttttcttcttcttcatcatcatcataatcattatcattaatcacgattggactggttgcatctctcccaggaccatcatatactctt |
272 |
Q |
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||||||| | | | | || || || |||||||||||||||| ||| |||||||| ||||| | |||||||||||| |||||||||| ||||||| || |
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| T |
25352056 |
cggatcatttaactcattgtcgtcgtcgtcatcatcataatcatcatcgttaatcacaattgggcaggttgcatctcttccaggaccattatatactttt |
25352155 |
T |
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| Q |
273 |
ttgaaggtcaaggttctcaatctatcactagtcct |
307 |
Q |
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| T |
25352156 |
ttgaaggccaaggttctcaatctattactagtcct |
25352190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 198 - 307
Target Start/End: Original strand, 25356750 - 25356859
Alignment:
| Q |
198 |
tcatcatcatcataatcattatcattaatcacgattggactggttgcatctctcccaggaccatcatatactcttttgaaggtcaaggttctcaatctat |
297 |
Q |
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|||||||||||||| |||| ||| ||||||| |||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
25356750 |
tcatcatcatcatattcatcatcgttaatcaaaattggactggctgcatctttcccaggaccatcatatacttttttgaaggccaaggttctcaatctat |
25356849 |
T |
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| Q |
298 |
cactagtcct |
307 |
Q |
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||||||||| |
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| T |
25356850 |
tactagtcct |
25356859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 25356604 - 25356711
Alignment:
| Q |
74 |
atcatacaagtcctaaacaaagcatgtcgaatgga-ttttggtcaaacttttggaaatttcgtcgcaacttctcaaggcttgcatgcaacttccaatttt |
172 |
Q |
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|||||| ||||||||| ||||||||| ||||||| |||| |||| ||||| |||||| | || |||||||| ||||| |||||||||||||||| ||| |
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| T |
25356604 |
atcataaaagtcctaatcaaagcatgaggaatggaatttttttcaagcttttcgaaattccatcccaacttcttaaggcatgcatgcaacttccaacttt |
25356703 |
T |
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| Q |
173 |
gggatcat |
180 |
Q |
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||||||| |
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| T |
25356704 |
cggatcat |
25356711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 25356914 - 25356986
Alignment:
| Q |
359 |
ctacaatatccaatagagatgttacataaagtctattattgagtaac---tacgaattgaaataaaatgaaga |
428 |
Q |
| |
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|||||| |||||| |||| |||||||||||||| |||||| |||||| || |||||||||||||||||||| |
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| T |
25356914 |
ctacaacatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaaga |
25356986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 428
Target Start/End: Original strand, 25349711 - 25349781
Alignment:
| Q |
361 |
acaatatccaatagagatgttacataaagtctattattgagtaac---tacgaattgaaataaaatgaaga |
428 |
Q |
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||||||||||| | || |||||||||||||| |||||| |||||| || |||||||||||||||||||| |
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| T |
25349711 |
acaatatccaagaaaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaaga |
25349781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 456
Target Start/End: Original strand, 25352285 - 25352346
Alignment:
| Q |
395 |
tattgagtaactacgaattgaaataaaatgaagacaaacaggctcacatcagatggtacagg |
456 |
Q |
| |
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|||| |||||||| |||||||||||||||||||| | || ||||||| |||||||||||| |
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| T |
25352285 |
tattaagtaactaagaattgaaataaaatgaagatatgaagactcacataagatggtacagg |
25352346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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