View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18097_low_11 (Length: 371)
Name: NF18097_low_11
Description: NF18097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18097_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 19462320 - 19462649
Alignment:
| Q |
18 |
cgtactaagtacaagacttatgtcgttgagcttgatgttctacacgtgaagctttctttctgcttgcattcgttcagatcatcctttccattcacattca |
117 |
Q |
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| T |
19462320 |
cgtactaagtacaagacgtatgtcgttgagcttgatgttctacacgtgaggctttctttctgctcgcattcgtttagatcatcctttccattcacattca |
19462419 |
T |
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| Q |
118 |
tctatcaacatgctgttttgtannnnnnnnnnnnnnnactattagggcatggttgttttgccaagaatgtttggtcatgactttggagaccaaattggac |
217 |
Q |
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| T |
19462420 |
tctattaacatgttgttttgtatttttttttt-----actattagggcatagttgttttgccaagaatgtttggccatgactttggagaccaaattggac |
19462514 |
T |
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| Q |
218 |
gctacacaagtctggtagattctaactacaatgagtttgaggtgttggtcgagaggaacaaagaaaacatttacttgactaagggttggcatgccctaaa |
317 |
Q |
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| T |
19462515 |
gctacacaagtctggtggattctaactacaattagattgaggtgttggtcgagaggaacaatgacaacatttatttgactaagggttgtcatgccctaaa |
19462614 |
T |
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| Q |
318 |
agacttctacgatgtttgtctcgaatcctgggtga |
352 |
Q |
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| T |
19462615 |
atacttctatagtttttgtctcgaatcctgggtga |
19462649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 155 - 353
Target Start/End: Original strand, 10196627 - 10196825
Alignment:
| Q |
155 |
actattagggcatggttgttttgccaagaatgtttggtcatgactttggagaccaaattggacgctacacaagtctggtagattctaactacaatgagtt |
254 |
Q |
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| T |
10196627 |
actattagggcatggttgtttcgctaagaatctttggtcatgactttgggggccaaattggacgctacgcaaggttggtggattctaactataatgagtt |
10196726 |
T |
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| Q |
255 |
tgaggtgttggtcgagaggaacaaagaaaacatttacttgactaagggttggcatgccctaaaagacttctacgatgtttgtctcgaatcctgggtgac |
353 |
Q |
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| T |
10196727 |
cgaggttttggtcgagaggaacaatgaccacatttacttgacaacgggttggcatgccctcaaggacttttacaatgtttctctcggatcttgggtgac |
10196825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 3651074 - 3651193
Alignment:
| Q |
159 |
ttagggcatggttgttttgccaagaatgtttggtcatgactttggagaccaaattggacgctacacaagtctggtagattctaactacaatgagtttgag |
258 |
Q |
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| T |
3651074 |
ttaggggatggttgttttgccaagcatgtttggccatgactttggggacgaacttggtcgctacgcagtgttggtggaccgtaactccaatgagtttgag |
3651173 |
T |
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| Q |
259 |
gtgttggtcgagaggaacaa |
278 |
Q |
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| T |
3651174 |
gttttggtagagagaaacaa |
3651193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 90 - 353
Target Start/End: Complemental strand, 31941948 - 31941691
Alignment:
| Q |
90 |
ttcagatcatcctttccattcacattcatctatcaacatgctgttttgtannnnnnnnnnnnnnnactattagggcatggttgttttgccaagaatgttt |
189 |
Q |
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| T |
31941948 |
ttcagatcatactttccattcacattcatctattaacatgttgttttgtattattttttt-----actattagggaatg-ttgttttgcgaagaatgttt |
31941855 |
T |
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| Q |
190 |
ggtcatgactttggagaccaaattggacgctacacaagtctggtagattctaactacaatgagtttgaggtgttggtcgagaggaacaaagaaaacattt |
289 |
Q |
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| T |
31941854 |
ggtcatgactttggagaccaaattggacgctatgcaagtctggtggattctaactacaatgagtttgaggtgttggtcgagaggaacaatgacaacattt |
31941755 |
T |
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| Q |
290 |
acttgactaagggttggcatgccctaaaagacttctacgatgtttgtctcgaatcctgggtgac |
353 |
Q |
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| T |
31941754 |
acttgactaagggttggcatgccctaaaaaacttatacggtgtttgtctcggatcctgggtgac |
31941691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 10852271 - 10852389
Alignment:
| Q |
235 |
gattctaactacaatgagtttgaggtgttggtcgagaggaacaaagaaaacatttacttgactaagggttggcatgccctaaaagacttctacgatgttt |
334 |
Q |
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| T |
10852271 |
gattctaactacaatgagtttgaggtgttggttgagaggaacaatgacaacatttacttgactaagggttgacatgtcctaaaagacttctacggtgttt |
10852370 |
T |
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| Q |
335 |
gtctcgaatcctgggtgac |
353 |
Q |
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| T |
10852371 |
gtctcggatcctcggtgac |
10852389 |
T |
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