View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18097_low_18 (Length: 250)
Name: NF18097_low_18
Description: NF18097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18097_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 18346638 - 18346543
Alignment:
| Q |
19 |
actacataaacacaaaatttcagagtttagtacagataaaaagcttaaaagcagaattgtgtttcttagagaatactataaatcaaggctgcatat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18346638 |
actacataaacacaaaatttcagagtttagtacaaataaaaagcttaaaagcagaattgtgtttcttagagaatactataaatcaaggctgcatat |
18346543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 18346493 - 18346446
Alignment:
| Q |
182 |
attattccattatggaagaatctccttagtcttaaccaatgatgctaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18346493 |
attattccattatggaagaatctccttagtcttaaccaatgatgctaa |
18346446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 18321374 - 18321318
Alignment:
| Q |
140 |
tttttattacgtgttcattgaaaaagactgaagttacataatattattccattatgg |
196 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
18321374 |
tttttattacatgttcattgaaaaagactaaagttacacaatattattctattatgg |
18321318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University