View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18097_low_2 (Length: 618)
Name: NF18097_low_2
Description: NF18097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18097_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 17 - 599
Target Start/End: Complemental strand, 4389751 - 4389168
Alignment:
| Q |
17 |
agcttttaccaatgtcctcatgtgcatctattttgttttgtaaatccctatgaaccttacttttatttttagccggcgccttttttctatttcccgtttg |
116 |
Q |
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| T |
4389751 |
agcttttaccaatgtcctcatgtgcatctattttgttttgtaaatccctatgaaccttacttttatttttagccggcgccttttttctatttcccgtttg |
4389652 |
T |
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| Q |
117 |
caaatttattgccaatactactctaaaatgttttacagtggactgcatcaagtagacaagtctaacccaagaatatattttccttttattgggaattcag |
216 |
Q |
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| T |
4389651 |
caaatttattgccaatactactctaaaatgttttacagtggactgcatcaagtagacaagtctaacccaagaatatattttccctttattgggaattcag |
4389552 |
T |
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| Q |
217 |
atatgttgggccaataaagctaaaaccaggaggcttaacgtgtctttcccttgttttaataactcccaattcatgccctagttcataacacttggagggt |
316 |
Q |
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| T |
4389551 |
atatgttgggccaataaagctaaaaccagaaggcttaacgtgtctttcccttgttttaataactcccaattcatgccctagttcataacacttggagggt |
4389452 |
T |
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| Q |
317 |
tcaacagtttttgcagaagcattttcaactttcaacatacttcataggctatccttatcactttctcgagacagcaaat-gcatcacaccataaagaatc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4389451 |
tcaacagtttttgcagaagcattttcaactttcaacatacttcataggctatccttatcactttctcgagacagcaaatggcatcacaccataaagaatc |
4389352 |
T |
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| Q |
416 |
gatcttcaatgaatggcatgagttttgtgtgaaccaaaactctagccgactccatagataaccctttctccacctctacatgatcaatctttcctatctt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4389351 |
gatcttcaatgaatggcatgagttttgtgtgaaccaaaactctagctgactccatagataaccctttctccacctctacatgatcaatctttcctatctt |
4389252 |
T |
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| Q |
516 |
atcaataacaagttccatatttttcagaccctaagcatgggttggtattcaaaatatttctagccaaacgcatcttgctacaca |
599 |
Q |
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| T |
4389251 |
atcaataacaagttccatatttttcagaccctaagcatgggttggtattcaaaatatttctagccaaacgcatcttgctacaca |
4389168 |
T |
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