View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18097_low_3 (Length: 580)
Name: NF18097_low_3
Description: NF18097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18097_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Original strand, 19462320 - 19462868
Alignment:
| Q |
18 |
cgtactaagtacaagacttatgtcgttgagcttgatgttctacacgtgaagctttctttctgcttgcattcgttcagatcatcctttccattcacattca |
117 |
Q |
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| T |
19462320 |
cgtactaagtacaagacgtatgtcgttgagcttgatgttctacacgtgaggctttctttctgctcgcattcgtttagatcatcctttccattcacattca |
19462419 |
T |
|
| Q |
118 |
tctatcaacatgctgttttgtannnnnnnnnnnnnnnactattagggcatggttgttttgccaagaatgtttggtcatgactttggagaccaaattggac |
217 |
Q |
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||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19462420 |
tctattaacatgttgttttgtatttttttttt-----actattagggcatagttgttttgccaagaatgtttggccatgactttggagaccaaattggac |
19462514 |
T |
|
| Q |
218 |
gctacacaagtctggtagattctaactacaatgagtttgaggtgttggtcgagaggaacaaagaaaacatttacttgactaagggttggcatgccctaaa |
317 |
Q |
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|||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||| |
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| T |
19462515 |
gctacacaagtctggtggattctaactacaattagattgaggtgttggtcgagaggaacaatgacaacatttatttgactaagggttgtcatgccctaaa |
19462614 |
T |
|
| Q |
318 |
agacttctacgatgtttgtctcgaatcctgggtgactatgatgtttgttagtaggcgcaagtttgttatccatttgaaggataagtttcgaaggaagata |
417 |
Q |
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| T |
19462615 |
atacttctatagtttttgtctcgaatcctgggtgattatggtgtttgttggtatgggcaagttttttatccatttgatgaataggtttcgaaggaagata |
19462714 |
T |
|
| Q |
418 |
ttaactcctaggtttaccccaccaatgatttttcaaattgagaagcaagctg-tcctttccataactttgatgtcttgccatcccctcttgtccatgatc |
516 |
Q |
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| T |
19462715 |
ccaactcctaggtttaccccaccaatgatttttcagcttgagaatcaagttgttcctttccataactttgatgtcttgccatccccttttgtccattatc |
19462814 |
T |
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| Q |
517 |
agattaattttgagaattcttatgaaaaaatgttgacttctgaagactatgatg |
570 |
Q |
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| T |
19462815 |
aggttaattttgagaattcttatgaaaaaatgtttacttctgaagactatgatg |
19462868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 155 - 437
Target Start/End: Original strand, 10196627 - 10196909
Alignment:
| Q |
155 |
actattagggcatggttgttttgccaagaatgtttggtcatgactttggagaccaaattggacgctacacaagtctggtagattctaactacaatgagtt |
254 |
Q |
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| T |
10196627 |
actattagggcatggttgtttcgctaagaatctttggtcatgactttgggggccaaattggacgctacgcaaggttggtggattctaactataatgagtt |
10196726 |
T |
|
| Q |
255 |
tgaggtgttggtcgagaggaacaaagaaaacatttacttgactaagggttggcatgccctaaaagacttctacgatgtttgtctcgaatcctgggtgact |
354 |
Q |
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| T |
10196727 |
cgaggttttggtcgagaggaacaatgaccacatttacttgacaacgggttggcatgccctcaaggacttttacaatgtttctctcggatcttgggtgact |
10196826 |
T |
|
| Q |
355 |
atgatgtttgttagtaggcgcaagtttgttatccatttgaaggataagtttcgaaggaagatattaactcctaggtttacccc |
437 |
Q |
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| T |
10196827 |
atggtttttgtcgatatgggcaagtttggtatccacatgaaggataggtttgggaggaagatatctactcctaagtttacccc |
10196909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 3651074 - 3651193
Alignment:
| Q |
159 |
ttagggcatggttgttttgccaagaatgtttggtcatgactttggagaccaaattggacgctacacaagtctggtagattctaactacaatgagtttgag |
258 |
Q |
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|||||| ||||||||||||||||| |||||||| ||||||||||| ||| || |||| |||||| || |||| || ||||| ||||||||||||| |
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| T |
3651074 |
ttaggggatggttgttttgccaagcatgtttggccatgactttggggacgaacttggtcgctacgcagtgttggtggaccgtaactccaatgagtttgag |
3651173 |
T |
|
| Q |
259 |
gtgttggtcgagaggaacaa |
278 |
Q |
| |
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| T |
3651174 |
gttttggtagagagaaacaa |
3651193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 570
Target Start/End: Original strand, 10196947 - 10197047
Alignment:
| Q |
470 |
tcctttccataactttgatgtcttgccatcccctcttgtccatgatcagattaattttgagaattcttatgaaaaaatgttgacttctgaagactatgat |
569 |
Q |
| |
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|||||||||||| |||||||||||| | |||||| |||| |||||| | |||||||||| ||||||||| || || ||||| | ||| || |||||| |
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| T |
10196947 |
tcctttccataaatttgatgtcttgtcgtccccttttgtgcatgatgactttaattttgaattttcttatgagaagatattgacctttgatgaatatgat |
10197046 |
T |
|
| Q |
570 |
g |
570 |
Q |
| |
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| |
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| T |
10197047 |
g |
10197047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 90 - 570
Target Start/End: Complemental strand, 31941948 - 31941472
Alignment:
| Q |
90 |
ttcagatcatcctttccattcacattcatctatcaacatgctgttttgtannnnnnnnnnnnnnnactattagggcatggttgttttgccaagaatgttt |
189 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |||||| ||||||||| |||||||||| ||| ||||||||| |||||||||| |
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| T |
31941948 |
ttcagatcatactttccattcacattcatctattaacatgttgttttgtattattttttt-----actattagggaatg-ttgttttgcgaagaatgttt |
31941855 |
T |
|
| Q |
190 |
ggtcatgactttggagaccaaattggacgctacacaagtctggtagattctaactacaatgagtttgaggtgttggtcgagaggaacaaagaaaacattt |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
31941854 |
ggtcatgactttggagaccaaattggacgctatgcaagtctggtggattctaactacaatgagtttgaggtgttggtcgagaggaacaatgacaacattt |
31941755 |
T |
|
| Q |
290 |
acttgactaagggttggcatgccctaaaagacttctacgatgtttgtctcgaatcctgggtgactatgatgtttgttagtaggcgcaagtttgttatcca |
389 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||||||| |||||||| ||| | |||||||||||||||| |
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| T |
31941754 |
acttgactaagggttggcatgccctaaaaaacttatacggtgtttgtctcggatcctgggtgactatggtgtttgttggtatgggcaagtttgttatcca |
31941655 |
T |
|
| Q |
390 |
tttgaaggataagtttcgaaggaagatattaactcctaggtttaccccaccaatgatttttcaaattgagaagcaagct-gtcctttccataactttgat |
488 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||| ||||||| |||| | |||||| |||||||||||| |
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| T |
31941654 |
tttgaaggatatgtttcgaaggaagatatcaactcctaagtttaccccaccaatgatgtttcagcttgagaaacaagttcttccttttcataactttgat |
31941555 |
T |
|
| Q |
489 |
gtcttgccatcccctcttgtccatgatcagattaattttgagaattcttatg-aaaaaatgttgacttctgaagactatgatg |
570 |
Q |
| |
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| ||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| |||||||| |
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| T |
31941554 |
gacttgccatccccttttgtccatgatcagattaattttgataattcttatgaaaaaaatgttgacttcagaagcctatgatg |
31941472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 235 - 570
Target Start/End: Original strand, 10852271 - 10852608
Alignment:
| Q |
235 |
gattctaactacaatgagtttgaggtgttggtcgagaggaacaaagaaaacatttacttgactaagggttggcatgccctaaaagacttctacgatgttt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||| ||||| |
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| T |
10852271 |
gattctaactacaatgagtttgaggtgttggttgagaggaacaatgacaacatttacttgactaagggttgacatgtcctaaaagacttctacggtgttt |
10852370 |
T |
|
| Q |
335 |
gtctcgaatcctgggtgactatgatgtttgttagtaggcgcaagtttgttatccatttgaaggataagtttcgaaggaagatattaactcctaggtttac |
434 |
Q |
| |
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|||||| ||||| |||||||||| || ||||| ||| | ||| ||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||| |
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| T |
10852371 |
gtctcggatcctcggtgactatggtgcttgttggtatgggcatgtttgttatccatatgaaggataggtttcaaaggaagatatcaactcctaggtttac |
10852470 |
T |
|
| Q |
435 |
cccaccaatgatttttcaaattgagaagcaagctg-tcctttccataactttgatgtcttgccatcccctcttgtccatgatcagattaattttgagaat |
533 |
Q |
| |
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|||||||||||||||||| ||||||| |||| || | ||||||||||||||||||||||||||||| || ||||||||||||| |||||||| ||||| |
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| T |
10852471 |
cccaccaatgatttttcagcttgagaaacaagttgtttctttccataactttgatgtcttgccatcctcttttgtccatgatcacgttaattttaagaat |
10852570 |
T |
|
| Q |
534 |
tcttatg-aaaaaatgttgacttctgaagactatgatg |
570 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10852571 |
tcttatgtaaaaaatgttgacttctgaagactatgatg |
10852608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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