View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18097_low_5 (Length: 531)
Name: NF18097_low_5
Description: NF18097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18097_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Complemental strand, 31603368 - 31602855
Alignment:
| Q |
1 |
tctgaaggtggtcttggactttgttcctcaaaaccgttaatgatgcggctatgttaaagttgaattgggatttagtttttcaaactatcagtgagctgtt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603368 |
tctgaaggtggtcttggactttgttcctcaaaaccgttaataatgcggctatgttaaagttgaattgggatttagtttttcaaactatcagtgagctgtt |
31603269 |
T |
|
| Q |
101 |
ttggttagagttagaacatcaaataataatgtctgtgcagtatctcaattttattagaagatttaacttctacaacttcataacgactttgaagaatcat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603268 |
ttggttagagttagaacatcaaataataatgtctgtgcagtatctcaattttattagaagatttaacttctacaacttcataacgactttgaagaatcat |
31603169 |
T |
|
| Q |
201 |
aaacttgtttggaatgagaagctctagaaactaatctaaacatggcttaaaactatgaaaacaccaaatgtaggagtttgatatgcaattttacctttac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603168 |
aaacttgtttggaatgagaagctctagaaactaatctaaacatggcttaaaactatgaaaacaccaaatgtaggagtttgatatgcaattttacctttac |
31603069 |
T |
|
| Q |
301 |
tgttgagtgatcaatgcagtgatttggacttttctttcaactttcttttaaaacttttacacagacggtgttcttgtttctccggaatcacttcgccaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603068 |
tgttgagtgatcaatgcagtgatttggacttttctttcaactttcttttaaaacttttacacagacggtgttcttgtttctccggaatcacttcgccaag |
31602969 |
T |
|
| Q |
401 |
catctgtaaccatagctctttcttcaaagtgctagtgaaaaccctgctgaaaccaatccaaaatttctgaacataacatcgcagagctaccgatcaacta |
500 |
Q |
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| T |
31602968 |
catctgtaaccatagctctttcttcaaagtgctagtgaaaaccctgctgaaaccaatccaaaatttctgaacataacatcggagagctaccgatcaacta |
31602869 |
T |
|
| Q |
501 |
gctcttgaactact |
514 |
Q |
| |
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|||||||||||||| |
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| T |
31602868 |
gctcttgaactact |
31602855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 31605824 - 31605358
Alignment:
| Q |
1 |
tctgaaggtggtcttggactttgttcctcaaaaccgttaatgatgcggctatgttaaagttgaattgggatttagtttttcaaactatcagtgagctgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
31605824 |
tctgaaggtggtcttggactttgttcctcaaaaccgttgataatgtggctacgttaaagttgaattgggagttagtttttcaaactatcagtgagctgct |
31605725 |
T |
|
| Q |
101 |
ttggttagagttagaacatcaaataataatgtctgtgcagtatctcaattttattagaagatttaacttctacaacttcataacgactttgaagaatcat |
200 |
Q |
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|||||||||||||| ||| | ||||||||||| | ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
31605724 |
ttggttagagttaggacagccaataataatgtttctgcagtatcacaattttattagaagatttaacttcaacaacttcataaggactttgaagaatcat |
31605625 |
T |
|
| Q |
201 |
aaacttgtttggaatgagaagctctagaaactaatctaaacatggcttaaaactatgaaaacaccaaatgtaggagtttgatatgcaattttacctttac |
300 |
Q |
| |
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|| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
31605624 |
aattttgttttgaatgagaagctttagaaactaatctaaacatggcttaaaactatgaaaacaccaaatgtatgagtttgatatgcagttttacctttac |
31605525 |
T |
|
| Q |
301 |
tgttgagtgatcaatgcagtgatttggacttttctttcaactttcttttaaaacttttacacagacggtgttcttgtttctccggaatcacttcgccaag |
400 |
Q |
| |
|
||||||| ||||||||||| ||||| || |||||||||||| |||||||||||||||||||||||| | ||| ||||| ||| ||||| |||||| |
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| T |
31605524 |
tgttgagcgatcaatgcagcgatttagatttttctttcaaccttcttttaaaacttttacacagacag-----ttgcgtctcctgaagcacttagccaag |
31605430 |
T |
|
| Q |
401 |
catctgtaaccatagctctttcttcaaagtgctagtgaaaaccctgctgaaaccaatccaaaatttctgaacataa |
476 |
Q |
| |
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||| |||||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
31605429 |
catttgtaaccata--tctt--ttcaaagtgcttgtgaaaaccctggtgaaaccaatccaaaatttctgaacataa |
31605358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 164 - 477
Target Start/End: Original strand, 7990227 - 7990537
Alignment:
| Q |
164 |
taacttctacaacttcataacgactttgaagaatcataaacttgtttggaatgagaagctctagaaactaatctaaacatggcttaaaactatgaaaaca |
263 |
Q |
| |
|
||||||||||||||| | || |||||||||||| |||||| ||||| |||| | ||||||| ||||||||||| | ||||| | ||||||||||||| |
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|
| T |
7990227 |
taacttctacaactttaaaaggactttgaagaaccataaaattgttctgaataataagctctcaaaactaatctagagatggccttcaactatgaaaaca |
7990326 |
T |
|
| Q |
264 |
cc-aaatgtaggagtttgatatgcaattttacctttactgttgagtgatcaatgcagtgatttggacttttctttcaactttcttttaaaacttttacac |
362 |
Q |
| |
|
| ||||||||| ||| ||||||||||||||||| ||||| ||| |||| ||| | ||||| || ||| |||| ||||| |||| |||||||| | |
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|
| T |
7990327 |
gctaaatgtaggggttacatatgcaattttaccttaactgtcgagcaatcattgccgcgatttagattttacttttgactttttttttgaacttttatgc |
7990426 |
T |
|
| Q |
363 |
agacggtgttcttgtttctccggaatcacttcgccaagcatctgtaaccatagctctttcttcaaagtgctagtgaaaaccctgctgaaaccaatccaaa |
462 |
Q |
| |
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||| | ||||||| ||||| | | ||||||||||||||| |||||||||||||||| ||||||||| | |||||||||| ||||||||||||||| |
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| T |
7990427 |
agaggtcgttcttgggtctcctgtagcacttcgccaagcatttgtaaccatagctctt----caaagtgcttgcgaaaaccctgttgaaaccaatccaaa |
7990522 |
T |
|
| Q |
463 |
atttctgaacataac |
477 |
Q |
| |
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||||||||| ||||| |
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|
| T |
7990523 |
atttctgaaaataac |
7990537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 164 - 477
Target Start/End: Complemental strand, 49779084 - 49778774
Alignment:
| Q |
164 |
taacttctacaacttcataacgactttgaagaatcataaacttgtttggaatgagaagctctagaaactaatctaaacatggcttaaaactatgaaaaca |
263 |
Q |
| |
|
||||||||| ||||| | || |||||||||||| |||||| ||||| |||| | ||||||| |||||||||||| ||||| | ||||||||||||| |
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|
| T |
49779084 |
taacttctaaaactttaaaaggactttgaagaagcataaaattgttctgaataataagctctcgaaactaatctagggatggccttcaactatgaaaaca |
49778985 |
T |
|
| Q |
264 |
cc-aaatgtaggagtttgatatgcaattttacctttactgttgagtgatcaatgcagtgatttggacttttctttcaactttcttttaaaacttttacac |
362 |
Q |
| |
|
| ||| ||||||||| | ||||||||||||||| ||||| ||| |||| || | |||| || ||| |||| |||||||||| ||||||||| | |
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| T |
49778984 |
gctaaacgtaggagttacacatgcaattttaccttaactgtcgagcaatcatcgccgcaatttagattttacttttgactttctttttaaacttttatgc |
49778885 |
T |
|
| Q |
363 |
agacggtgttcttgtttctccggaatcacttcgccaagcatctgtaaccatagctctttcttcaaagtgctagtgaaaaccctgctgaaaccaatccaaa |
462 |
Q |
| |
|
||| | |||||||| ||||| | | ||| ||||||||||| |||||||||||||||| ||||||||| | |||||||||| ||||||||||||||| |
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| T |
49778884 |
agaggttgttcttgggtctcctgtagcacctcgccaagcatttgtaaccatagctctt----caaagtgcttgcgaaaaccctgttgaaaccaatccaaa |
49778789 |
T |
|
| Q |
463 |
atttctgaacataac |
477 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
49778788 |
atttctgaaaataac |
49778774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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