View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18097_low_6 (Length: 490)
Name: NF18097_low_6
Description: NF18097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18097_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 134 - 465
Target Start/End: Complemental strand, 17613526 - 17613193
Alignment:
| Q |
134 |
tatgctttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggttagaatcgcataacttaataaactt |
233 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| || | |
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| T |
17613526 |
tatgctttggtgatgcccattgagtatcaggtggagtagtttactacagaatcacctagaacaaaactggttggttagaatcgcataactgaatacacat |
17613427 |
T |
|
| Q |
234 |
ataagtaattatcaaagctgaaaaaggttttattactatgtgtggagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtcc-nnnnn |
332 |
Q |
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||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17613426 |
ataagtagttatcaaagttgaaaaaggttttattactgtgtgttgagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtccaaaaaa |
17613327 |
T |
|
| Q |
333 |
nngtggtagaataacattagctt-taaaggataaagaaatgtattaactgaaatatctgagaaggtatttaaatatcgtgatactgatagatatccttaa |
431 |
Q |
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||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17613326 |
aagtggtagaatatcattagcttataaaggataaaggaatgtattaactgaaatatctgagaaggtatttaaatatcgtgatactgatagatatccttaa |
17613227 |
T |
|
| Q |
432 |
atatttcaatttcacctttagtccttgtaatttg |
465 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |
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| T |
17613226 |
atatttcaaattcacctttagtccttgtaatttg |
17613193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 134 - 465
Target Start/End: Complemental strand, 17626711 - 17626378
Alignment:
| Q |
134 |
tatgctttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggttagaatcgcataacttaataaactt |
233 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| || | |
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| T |
17626711 |
tatgctttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggttagagtcccataactgaatagacat |
17626612 |
T |
|
| Q |
234 |
ataagtaattatcaaagctgaaaaaggttttattactatgtgtggagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtcc-nnnnn |
332 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17626611 |
ataagtagttatcaaagctgaaaaaggttttattactgtgtgtcgagtcgactgatgatcgtggtgacacgcttcccttttctgtatcaagtccaaaaaa |
17626512 |
T |
|
| Q |
333 |
nngtggtagaataacattagctttaaaggataaagaaatgtattaactgaaatatctgagaaggtatttaaatatcgtgata--ctgatagatatcctta |
430 |
Q |
| |
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|||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |
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| T |
17626511 |
aagtggtacaatatcattagccataaaggataaagaaatgtattaactgaaatatc-cagaaggtatttaaatatcgtgataggcgcatagatatcctta |
17626413 |
T |
|
| Q |
431 |
aatatttcaatttcacctttagtccttgtaatttg |
465 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| |
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|
| T |
17626412 |
aatatttcaatttcacctctagtctttgtaatttg |
17626378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 134 - 465
Target Start/End: Complemental strand, 17671107 - 17670774
Alignment:
| Q |
134 |
tatgctttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggttagaatcgcataacttaataaactt |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||| || | |
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|
| T |
17671107 |
tatgctttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggtttgagtcccataactgaatagacat |
17671008 |
T |
|
| Q |
234 |
ataagtaattatcaaagctgaaaaaggttttattactatgtgtggagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtcc-nnnnn |
332 |
Q |
| |
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| ||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17671007 |
agaagtagttatcaaagctgaaaaaggttttattactgtgtgtagagtcgactgatgatcgtggtgacacgcttcccttttctgtatcaagtccaaaaaa |
17670908 |
T |
|
| Q |
333 |
nngtggtagaataacattagctttaaaggataaagaaatgtattaactgaaatatctgagaaggtatttaaatatcgtgata--ctgatagatatcctta |
430 |
Q |
| |
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|||||| | || ||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||| |
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| T |
17670907 |
aagtggtacagtatcattagccataaaggataaagaaatgtataaactgaaatatc-cagaaggtatttaaatatcgtgataggcgcatagatatcctta |
17670809 |
T |
|
| Q |
431 |
aatatttcaatttcacctttagtccttgtaatttg |
465 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| |
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|
| T |
17670808 |
aatatttcaatttcacctctagtctttgtaatttg |
17670774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 134 - 300
Target Start/End: Complemental strand, 17693259 - 17693093
Alignment:
| Q |
134 |
tatgctttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggttagaatcgcataacttaataaactt |
233 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
17693259 |
tatggtttggtgatgtccattgagtatcaggtggaatagtttattacagaatcacctagaacaaaactggttggttagaatcgcataactgaataaacat |
17693160 |
T |
|
| Q |
234 |
ataagtaattatcaaagctgaaaaaggttttattactatgtgtggagtcgattgatgatcgtggtga |
300 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17693159 |
ataagtagttatcaaagttgaaaaaggttttattactgtgtgtggagtcgattgatgatcgtggtga |
17693093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 335 - 465
Target Start/End: Complemental strand, 17692977 - 17692848
Alignment:
| Q |
335 |
gtggtagaataacattagctttaaaggataaagaaatgtattaactgaaatatctgagaaggtatttaaatatcgtgatactgatagatatccttaaata |
434 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17692977 |
gtggtagaatatcattagctataaaggataaagaaatgtattaactgaaatatca-agaaggtatttaaatatcgtgatagggatagatatccttaaata |
17692879 |
T |
|
| Q |
435 |
tttcaatttcacctttagtccttgtaatttg |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
17692878 |
tttcaatttcacctttagtccttgtaatttg |
17692848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 17613711 - 17613628
Alignment:
| Q |
18 |
acatagatatcaatccctgtacactaggttctgcatgatatatgtctgttagcaatgaaattaaggcgtaaagacaccgtcatc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
17613711 |
acatagatatcaatccctgtacactaggttctgcgtgatatatgtccgttagcactgaaattaaggcgtaaagacaccatcatc |
17613628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 17671292 - 17671209
Alignment:
| Q |
18 |
acatagatatcaatccctgtacactaggttctgcatgatatatgtctgttagcaatgaaattaaggcgtaaagacaccgtcatc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||| ||||||||| ||||| |
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| T |
17671292 |
acatagatatcaatccctgtacactaggttctgcatgatagatgtccgttagcactgaaactaaggcgaaaagacaccatcatc |
17671209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 17693442 - 17693361
Alignment:
| Q |
20 |
atagatatcaatccctgtacactaggttctgcatgatatatgtctgttagcaatgaaattaaggcgtaaagacaccgtcatc |
101 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| | | | ||||||| |||||||||||| |||||||||| ||||| |
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|
| T |
17693442 |
atagatatcaaaccctgtacactaagttctgcatgatagacgcccgttagcactgaaattaaggcataaagacaccatcatc |
17693361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 135
Target Start/End: Complemental strand, 17613569 - 17613540
Alignment:
| Q |
106 |
aaggttaggtcactcttcacaagcaccata |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17613569 |
aaggttaggtcactcttcacaagcaccata |
17613540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 135
Target Start/End: Complemental strand, 17626754 - 17626725
Alignment:
| Q |
106 |
aaggttaggtcactcttcacaagcaccata |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17626754 |
aaggttaggtcactcttcacaagcaccata |
17626725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 135
Target Start/End: Complemental strand, 17671150 - 17671121
Alignment:
| Q |
106 |
aaggttaggtcactcttcacaagcaccata |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17671150 |
aaggttaggtcactcttcacaagcaccata |
17671121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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