View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18097_low_8 (Length: 442)
Name: NF18097_low_8
Description: NF18097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18097_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 9643858 - 9643445
Alignment:
| Q |
18 |
tgctgtaatctgtagacagaattgatgttagtgttatcatcttttaaggactaaacatatttatattttaatatttcattgtaaaagcatcattaatgga |
117 |
Q |
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| T |
9643858 |
tgctgtaatctgtagacagaattgatgttagtgttatcatcttttaaggactaaacatatttatattttaatatttcattgtaaaagcatcattaatgga |
9643759 |
T |
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| Q |
118 |
aattggagtatcattacctcagttctatacatcttaatctcgtcttcaagaggcgtgatgacactttcaaatggataaaaatcttcttccttttgatctg |
217 |
Q |
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| T |
9643758 |
aattggagtatcattacctcagttctatacatcttaatctcgtcttcaagaggcgtgatgacactttcaaatggataaaaatcttcttccttttgatctg |
9643659 |
T |
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| Q |
218 |
tgtgtaatcttctaagtgctgattctgcagcatattgtgcagccaacgcatctttcttttcgtccgtcagtttcttgatttctaggttctgcatatgaag |
317 |
Q |
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| T |
9643658 |
tgtgtaatcttctaagtgctgattctgcagcatattgtgcagccaacgcatctttcttttcgtccgtcagtttcttgatttctaggttctgcatatgaag |
9643559 |
T |
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| Q |
318 |
atattttgaataacatgcatcatagaatttatcattgttttggatacaatagtaccttgtttttaagatgatcctctttaagtcttagtctctcatccat |
417 |
Q |
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| T |
9643558 |
atattttgaataacatgcatcatagaatttatcattgttttggatacaatagtaccttgtttttaagatgatcctctttaagtcttagtctctcatccat |
9643459 |
T |
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| Q |
418 |
cttactgacttcat |
431 |
Q |
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| T |
9643458 |
cttactgacttcat |
9643445 |
T |
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Back To:
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 56006479 - 56006393
Alignment:
| Q |
226 |
cttctaagtgctgattctgcagcatattgtgcagccaacgcatctttcttttcgtccgtcagtttcttgatttctaggttctgcata |
312 |
Q |
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| T |
56006479 |
cttctaagtgttgcttctgcggcatattgtgcagccattgcacttttctttttgtctgtcagtttcttgattcctatattctgcata |
56006393 |
T |
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