View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18097_low_9 (Length: 431)
Name: NF18097_low_9
Description: NF18097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18097_low_9 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 33693065 - 33692653
Alignment:
| Q |
19 |
atagccaacactctcactctccgccaccactcgtccgcctcctttgtctctccccacgactatgagttcagctgcagcaacagccccgcggtcattaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
33693065 |
atagccaacactctcactctccgccaccactcgtccgcctcctttgtctctccccacgactatgagttcagctgcagcaacagccccgcgttcattaaat |
33692966 |
T |
|
| Q |
119 |
tccacaacaaaaataaaaaccaccaccatggtcgccaccgcaacgatgtttccaccattcaaaaggttcttgaaatcctcaatgatgttgatgcttcttc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33692965 |
tccacaacaaaaataaaaaccaccaccatggtcgccaccgcaacgatgtttccaccattcaaaaggttcttgaaatcctcaatgatgttgatgcttcttc |
33692866 |
T |
|
| Q |
219 |
attttcttctccttctcctttagtgacattttctggatttggaaaaagtcccattgggnnnnnnnttagagtcactgattcgccatttcctctataggta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
33692865 |
attttcttctccttctcctttagtgacatttcctggatttggaaaaactcccattgggaaaaaaattagagtcactgattcgccatttcctctaaaggta |
33692766 |
T |
|
| Q |
319 |
gatgaaggtgatgatcatagttatgttgatgttgcagcggaagaatttattaaaaggttttataagaatcttaacttgcaagagaaattagtggctattc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
33692765 |
gatgaaggtgatgatcatagttatgttgatgttgcagcggaagaatttattaaaaggttttataagaatcttaacttgcaagagaaattagtggcttttc |
33692666 |
T |
|
| Q |
419 |
gattaccttacac |
431 |
Q |
| |
|
|| ||||||||| |
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| T |
33692665 |
aatcaccttacac |
33692653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 33664048 - 33663669
Alignment:
| Q |
19 |
atagccaacactctcactctccgccaccactcgtccgcctcctttgtctctccccacgactatgagttcagctgcagcaacagccccgcggtcattaaat |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||||| | |||||||| |
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|
| T |
33664048 |
atagccaacactctagctctccgccaccactcgactgcctccttcgtctctccccacgactacgagttcagctgcagcaacagccccgccgccattaaat |
33663949 |
T |
|
| Q |
119 |
tccacaacaaaaataaaaaccaccaccatggtcgccaccgcaacgatgtttccaccattcaaaaggttcttgaaatcctcaatgatgttgatgcttcttc |
218 |
Q |
| |
|
|||||||||||||||| ||| | |||| || ||||||| |||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||||| |
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|
| T |
33663948 |
tccacaacaaaaataataactatcaccgcggccgccaccacaacgatgtttccaccattcaaaaggttctagaaattcttaatgatgttgattcttcttc |
33663849 |
T |
|
| Q |
219 |
attttcttctccttctcctttagtgacattttctggatttggaaaaagtcccattgggnnnnnnnttagagtcactgattcgccatttcctctataggta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||| ||| |
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|
| T |
33663848 |
tttttcttctccttctcctttagtgacatttcctggatttggaaaaagtcccattgggaaaaaaattagagtcgctgattcaccatttcccctaaaggat |
33663749 |
T |
|
| Q |
319 |
gatgaaggtgatgatcatagttatgttgatgttgcagcggaagaatttattaaaaggttttataagaatcttaacttgca |
398 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
33663748 |
gaagaaggtgatgatcatagtcatgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaacttgca |
33663669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 33674648 - 33674272
Alignment:
| Q |
19 |
atagccaacactctcactctccgccaccactcgtccgcctcctttgtctctccccacgactatgagttcagctgcagcaacagccccgcggtcattaaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||| ||| || |||||||||| |
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|
| T |
33674648 |
atagccaacactctcactctccgccaccactcgtcttcctccttcgtctcaccccacgactacgagttcagctgcagcaacaaccctgccgtcattaaat |
33674549 |
T |
|
| Q |
119 |
tccacaacaaaaataaaaaccaccaccatggtcgccaccgcaacgatgtttccaccattcaaaaggttcttgaaatcctcaatgatgttgatgcttcttc |
218 |
Q |
| |
|
|||||||||||||||||||||||| |||| | |||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || |
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|
| T |
33674548 |
tccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatcctcaatgatgttgatgctact-- |
33674451 |
T |
|
| Q |
219 |
attttcttctccttctcctttagtgacattttctggatttggaaaaagtcccattgggnnnnnnnttagagtcactgattcgccatttcctctataggta |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||| || ||||| ||| ||| |
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|
| T |
33674450 |
-ttttcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaaaattagagtcactgattcaccttttcccctaaaggat |
33674352 |
T |
|
| Q |
319 |
gatgaaggtgatgatcatagttatgttgatgttgcagcggaagaatttattaaaaggttttataagaatcttaacttgca |
398 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
33674351 |
gaagaaggtgatgatcatagtcatgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaacttgca |
33674272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 33685838 - 33685447
Alignment:
| Q |
19 |
atagccaacactctcactctccgccaccactcgtccgcctcctttgtctctccccacgactatgagttcagctgcagcaacagccccgcggtcattaaat |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||| | | |||||||| |
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|
| T |
33685838 |
atagccaacactctagctctccgccaccactcgactgcctccttcgtctctccccacgactacgagttcagctgcagcaacagccccactgccattaaat |
33685739 |
T |
|
| Q |
119 |
tccacaacaaaaataaaaaccaccaccatggtcgccaccgcaacgatgtttccaccattcaaaaggttcttgaaatcctcaatgatgttgatgcttcttc |
218 |
Q |
| |
|
|||||| ||||||||| ||| | |||| || ||||||| |||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |||||| |
|
|
| T |
33685738 |
tccacagcaaaaataataactatcaccgcggccgccaccacaacgatgtttcaaccattcaaaaggttctagaaatcctcaatgatattgatgtttcttc |
33685639 |
T |
|
| Q |
219 |
attttcttctccttctcctttagtgacattttctggatttggaaaaagtcccattgggnnnnnnnttagagtcactgattcgccatttcctctataggta |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| | |
|
|
| T |
33685638 |
tttttcttctccttctcctttagtggcatttcctggttttggaaaaagtcccattgggaaaaaaattagagtcactgattctccatttcctctcaaggaa |
33685539 |
T |
|
| Q |
319 |
gatgaaggtgatgatcatagttatgttgatgttgcagcggaagaatttattaaaaggttttataagaatcttaacttgcaagagaaattagt |
410 |
Q |
| |
|
|| ||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||| | |||||||| |
|
|
| T |
33685538 |
gaagaaggggatgatcatagtcatgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaaattgcaacaaaaattagt |
33685447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 86713 - 87103
Alignment:
| Q |
19 |
atagccaacactctcactctccgccaccactcgtccgcctcctttgtctctccccacgactatgagttcagctgcagcaacagccccgcggtcattaaat |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
86713 |
atagccaacactctagctctccgccaccactcgtccgcctccttcgtctctcccaacgactacgagttcagctgcagcaacagccccgccgtcattaaat |
86812 |
T |
|
| Q |
119 |
tccacaacaaaaataaaaaccaccaccatggtcgccaccgcaacgatgtttccaccattcaaaaggttcttgaaatcctcaatgatgttgatgcttcttc |
218 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
86813 |
tccataacaaaaataaaaaccaccatcatggccgccaccacaacgatgtttccaccattcaaaaggttctagaaatccttaatgaagttgatgcttcttt |
86912 |
T |
|
| Q |
219 |
attttcttctccttctcctttagtgacattttctggatttggaaaaagtcccattgggnnnnnnnttagagtcactgattcgccatttcctctataggta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||| || ||||||||| ||||| |
|
|
| T |
86913 |
tttttcttctccttctcctttagtgacatttcctggatttggaaaaagtcccattggaaaaaaaattagagtcaccgattctccgtttcctctaaaggta |
87012 |
T |
|
| Q |
319 |
gatgaaggtgatgatcatagttatgttgatgttgcagcggaagaatttattaaaaggttttataagaatcttaacttgcaagagaaattag |
409 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||| | ||||||| |
|
|
| T |
87013 |
gatgaaggtgatgatcatagtcatgttgacgttgcagctgaagaatttattaaaaggttttataagaatctcaacttacaacaaaaattag |
87103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 103382 - 103765
Alignment:
| Q |
19 |
atagccaacactctcactctccgccaccactcgtccgcctcctttgtctctccccacgactatgagttcagctgcagcaacagccccgcggtcattaaat |
118 |
Q |
| |
|
||||||||| ||||||| |||||||||||| || ||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
103382 |
atagccaaccctctcaccctccgccaccacctgttcgcctccttcatctctcccaacgactacgagttcagctgcagcaacagccccgccgtcattaaat |
103481 |
T |
|
| Q |
119 |
tccacaacaaaaataaaaaccaccaccatggtcgccaccgcaacgatgtttccaccattcaaaaggttcttgaaatcctcaatgatgttgatgcttcttc |
218 |
Q |
| |
|
||| ||||||||||||||||| |||| || |||||| | | |||||||||||||||||||||||| | ||||| |||||| | |||||||||||||| |
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|
| T |
103482 |
tccttaacaaaaataaaaaccatcaccgcggctgccaccacgatgatgtttccaccattcaaaaggttttagaaattctcaataaagttgatgcttcttc |
103581 |
T |
|
| Q |
219 |
attttcttctccttctcctttagtgacattttctggatttggaaaaagtcccattgggnnnnnnnttagagtcactgattcgccatttcctctataggta |
318 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |||||||||||||||| |||||||||||| ||| | |
|
|
| T |
103582 |
tttctcttctccttctcctttagtgacatttcctgggtttggaaaaagtcccgttggaaaaaaatttagagtcactgattctccatttcctctaaaggaa |
103681 |
T |
|
| Q |
319 |
gatgaagg---tgatgatcatagttatgttgatgttgcagcggaagaatttattaaaaggttttataagaatcttaacttgcaa |
399 |
Q |
| |
|
|| ||||| ||||||||||||| ||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
103682 |
gaagaaggtgatgatgatcatagtcatgttgatgttgcggctgaagaatttattaaaaagttttataagaatcttaacttgcaa |
103765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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