View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18098_high_2 (Length: 514)
Name: NF18098_high_2
Description: NF18098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18098_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 412
Target Start/End: Original strand, 50106174 - 50106574
Alignment:
| Q |
15 |
aattttcactatctttaagcttcaatttcgctctgttcaatttcaacgcttaattacttacttgattagttggaagnnnnnnnnctaactttatcttcaa |
114 |
Q |
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| T |
50106174 |
aattttcactatctttaagcttcaatttcgctctgttcaatttcaacgcttaattactt----gattagttggaagaaaaaaaactaactttatcttcaa |
50106269 |
T |
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| Q |
115 |
tttcaaaaacccatatgcaaattattcaatcaaatcannnnnnnn------gtataacta-tttgttgatcattttttgcgcatacacaatctgatttat |
207 |
Q |
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| T |
50106270 |
tttcaaaaacccatatgcaaattattcaatcaaatcattttttttttttttgtataactaatttgttgatcattttttgcgcatacacaatctgatttat |
50106369 |
T |
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| Q |
208 |
gaaacagtagaattaatcaagaagtaaagaccnnnnnnnncttctttggctggttcaatttcagatttcaaattattttctcatatatcatgaggttcat |
307 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50106370 |
gaaacagtagaataaatcaagaagtaaagaccttttttttcttctttggctggttcaatttcagatttcaaattattttctcatatatcatgaggttcat |
50106469 |
T |
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| Q |
308 |
cactatcttgtagctggaaaagccagattttgattttcattttgattcttttagtttaaaatacctttgaaacatggttttgagctctactggttttcag |
407 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50106470 |
caatatcttgtagctggaaaagccagattttgattttgattttgattcttttagtttaaaatacctttgaaacatggttttgagctctactggttttcag |
50106569 |
T |
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| Q |
408 |
atttg |
412 |
Q |
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| T |
50106570 |
atttg |
50106574 |
T |
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