View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18098_low_1 (Length: 625)
Name: NF18098_low_1
Description: NF18098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18098_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Original strand, 29090201 - 29090626
Alignment:
| Q |
14 |
gaaagagaggaagtatacgaagatcaatgttaataggatactcattcataatcatatggttattgttgattgatttcataatgagcttgttgcattcttc |
113 |
Q |
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| T |
29090201 |
gaaagagaggaagtatatgaagatcaatggtaataggatactcattcat------atggttattgttgatggatttcataatgagcttgttgcattcttc |
29090294 |
T |
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| Q |
114 |
ctccatggacgctgacatagttcttgtcgatagattccacaacaagtttattgcactcttctccatggcacaattgacatccttggaggaagaaaacagc |
213 |
Q |
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| T |
29090295 |
ctccatggacgctgacatagttcttgtcgatagataccacaacaagtttattgcactcttctccatggcacaattgacatccttggaggaagaaaacagc |
29090394 |
T |
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| Q |
214 |
catggaagatgagtgcaatatactcatcatggaatctttatcccatcatatatactgtattattttaaaatttctccgcaaaatcatgataataacaaaa |
313 |
Q |
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| T |
29090395 |
catggaagatgagtgcaatatactcatcatggaatctttatcccatcatatatactgtattattttaaaatttctccgcaaaatcatgataataacgaaa |
29090494 |
T |
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| Q |
314 |
gatgagctagctcaaatgcacactatttatcttcaagaagtttccccaaaatttggttaggtctacacaaggattgaatgttgtttaaagcaacaaagaa |
413 |
Q |
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| T |
29090495 |
gatgagctagctcaaatgcacactatttatcttcaagaagtttccccaaaatttggttaggtctgcacaaggattgaatgttgtttaaagcaacaaagaa |
29090594 |
T |
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| Q |
414 |
gcaggtcattgtctaatatattggaatggagg |
445 |
Q |
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| T |
29090595 |
gcaggtcattctctaatatattggactggagg |
29090626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 443 - 609
Target Start/End: Original strand, 29090710 - 29090877
Alignment:
| Q |
443 |
aggtaggtgtatataaagagagaaaatatgaccaattgattaatgagcaccatgcaggctacctttgtgtcaatttcttcttcctcttttgtgttgataa |
542 |
Q |
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| T |
29090710 |
aggtaggtgtatataaagagagaaaatatgaccaattgattaatgagcaccatgcaggctacctttgtgtcaatttcttcttcctcttttgtgttgataa |
29090809 |
T |
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| Q |
543 |
ttgttttgct-acnnnnnnnttgttccacaatttcagctactgctgctttacacatgtatgatgagtt |
609 |
Q |
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| T |
29090810 |
ttgttttgctaacaaaaaaattgttccacaatttcagctactgctgctttacacatgtatgatgagtt |
29090877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 537
Target Start/End: Original strand, 29087593 - 29087681
Alignment:
| Q |
449 |
gtgtatataaagagagaaaatatgaccaattgattaatgagcaccatgcaggctacctttgtgtcaatttcttcttcctcttttgtgtt |
537 |
Q |
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| T |
29087593 |
gtgtataaagagatagaaaataagccctattgattaataagcttcatgcaagctaccattgtgtcaatttcttcttcctcttttgtgtt |
29087681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 276 - 373
Target Start/End: Original strand, 14019950 - 14020046
Alignment:
| Q |
276 |
ttttaaaatttctccgcaaaatcatgataataacaaaagatgagctagctcaaatgcacactatttatcttcaagaagtttccccaaaatttggttag |
373 |
Q |
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| T |
14019950 |
ttttaaaatttctccgcaaaatcatgattacaacaaaagctgagctagctcaaatgcacacta-ttatcttcatgaagtttccccaaaatttggttag |
14020046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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