View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18098_low_3 (Length: 501)
Name: NF18098_low_3
Description: NF18098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18098_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 12 - 484
Target Start/End: Original strand, 24776950 - 24777422
Alignment:
| Q |
12 |
aagaaatgaagattgagtataattgtgtacattattacattaccaagtacctcagtttaatattctacagattgtggcattaacacctttgttcttttca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24776950 |
aagaaatgaagattgagtataattgtgtacattattacattaccaagtacctcagtttaatattctacagattgtggcattaacacctttgttcttttca |
24777049 |
T |
|
| Q |
112 |
attgtattccacaacaaccattaggcaatgtttaataacatgaaattaaaataggagaaacaaacaaatcaacaaacttgactgttaatttcaaactctt |
211 |
Q |
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| T |
24777050 |
attgtattccacaacaaccattaggcaatgtttaataacatgaaattaaaacaggagaaacaaacaaatcaacaaacttgactgttaatttcaaactctt |
24777149 |
T |
|
| Q |
212 |
ccaagattccacatttagtttgaaagctgttcagatgcataaaagcaataaaataaaaggccctagagtggagaatgcacatccattgtttaacattgat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24777150 |
ccaagattccacatttagtttgaaagctgttcagatgcataaaagcaataaaataaaaggccctacagtggagaatgcacatccattgtttaacattgat |
24777249 |
T |
|
| Q |
312 |
ttaaacgaggtagaaaataatgtgacatgcacacctcttccaaattcagagataggcaaacatacgcaatagcttgataatgtataaaagcatcctaaaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
24777250 |
ttaaacgaggtagaaaataatgtgacatgcacacctcttccaaattcagagataggcaaacatacgcaataccttgataatgtataaaagcgtcctaaaa |
24777349 |
T |
|
| Q |
412 |
ctacaatcaaattcaaaacctaagatgccaatccaacatctatatccaactaaacttcgggcttggtttcttc |
484 |
Q |
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| T |
24777350 |
ctacaatcaaaatcaaaacctaagatgccaatccaacatctatatccaactaaacttcgggcttggtttcttc |
24777422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 48921988 - 48922109
Alignment:
| Q |
27 |
agtataattgtgtacattattacattaccaagtacctcagtttaatattctacagattgtggcattaacacctttgttcttttcaattgtattccacaac |
126 |
Q |
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||||||||||||||||||||| ||| |||||| ||| ||||||||||||| |||||||||||| || ||||||||||||||||||| ||||| || |
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| T |
48921988 |
agtataattgtgtacattattgcatcaccaagcgccttagtttaatattctttagattgtggcatcaaggcctttgttcttttcaattgcattcc---ac |
48922084 |
T |
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| Q |
127 |
aaccattaggcaatgtttaataaca |
151 |
Q |
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| T |
48922085 |
aaccattaggcattgtttaataaca |
48922109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 48869599 - 48869475
Alignment:
| Q |
27 |
agtataattgtgtacattattacattaccaagtacctcagttta---atattctacagattgtggcattaacacctttgttcttttcaattgtattccac |
123 |
Q |
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| T |
48869599 |
agtataattgtgtacattattgcatcaccaagtgccttaatttattaatattctttagattgtggcatcaaggcctttgttcttttcaattgcattcc-- |
48869502 |
T |
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| Q |
124 |
aacaaccattaggcaatgtttaataaca |
151 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48869501 |
-acaaccattaggcaatgtttaataaca |
48869475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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