View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18098_low_4 (Length: 336)
Name: NF18098_low_4
Description: NF18098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18098_low_4 |
 | |
|
| [»] scaffold0105 (5 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold1330 (1 HSPs) |
| | |
|
| [»] scaffold0496 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 7458092 - 7458417
Alignment:
| Q |
1 |
tgattgcagttgtaaaaaatgtattgtataatgctgattacgcaacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattggaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7458092 |
tgattgcagttgtaaaaaatgtattgtataatgctgattacgcaacaaaggaagtaaagaagtatgataaaaacaataactcttgggttaccattggaag |
7458191 |
T |
|
| Q |
101 |
atttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcattgtaga |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7458192 |
atttcctgagcaagccacctcaatgaaaggttggggattagcttttcgtgcatgtggagatatgctaatttttcttggaggtcccattcttcattgtaga |
7458291 |
T |
|
| Q |
201 |
ggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
7458292 |
ggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcaagaaagaaaatagggagctttgtgtatagttgcactg |
7458391 |
T |
|
| Q |
301 |
tgatgggatgttgatgatgttctctg |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
7458392 |
tgatgggatgttgatgatgttctctg |
7458417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 7412013 - 7412339
Alignment:
| Q |
1 |
tgattgcagttgtaaaaaatgtattgtataatgctgattacgcaacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattggaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7412013 |
tgattgcagttgtaaaaaatgtattgtataatgctgattacgcaacaaaggaagtaaagaagtatgataaaaacaataactcttgggttaccattggaag |
7412112 |
T |
|
| Q |
101 |
atttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcattgtaga |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7412113 |
atttcctgagcaagccacctcaatgaaaggttggggattagcttttcgtgcatgtggagatatgctaatttttcttggaggtcccattcttcattgtaga |
7412212 |
T |
|
| Q |
201 |
ggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
7412213 |
ggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcaagaaagaaaatagggagctttgtgtatagttgcactg |
7412312 |
T |
|
| Q |
301 |
tgatgggatg-ttgatgatgttctctg |
326 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
7412313 |
tgatgggatgtttgatgatgttctctg |
7412339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 13031387 - 13031461
Alignment:
| Q |
249 |
tggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatgatgttct |
323 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| ||| |||| |||||||||||||||||| |||||| |
|
|
| T |
13031387 |
tggaatcaacttgcgagaaagcaatcagggagctttgtgcataactgcactgtgatgggatgttgatgttgttct |
13031461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 7419439 - 7419361
Alignment:
| Q |
245 |
acaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcattgtgatgggatgttgatgatgttct |
323 |
Q |
| |
|
|||||||||||| |||||||||||| || ||||||||||||| ||| |||| ||||||||||| |||||| |||||| |
|
|
| T |
7419439 |
acaatggaatcagcttgcgagaaagcaatcagggagctttgtgcataactgcactgtgatgggatattgatgttgttct |
7419361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 3748 - 3433
Alignment:
| Q |
1 |
tgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattgga |
98 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | ||||||| ||||||| |||||| ||||| |||| ||||||||||| | ||||||| |
|
|
| T |
3748 |
tgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaa--aagtaaagaagtatgataaagacaacaactcttgggtcatcattgga |
3651 |
T |
|
| Q |
99 |
agatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcattgta |
198 |
Q |
| |
|
|| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || ||||| || |
|
|
| T |
3650 |
agctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttattcatggtg |
3551 |
T |
|
| Q |
199 |
gaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcat |
298 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| ||| | |
|
|
| T |
3550 |
gaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcataattgtac |
3451 |
T |
|
| Q |
299 |
tgtgatgggatgttgatg |
316 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3450 |
tgtgatgggatgttgatg |
3433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 35344 - 35659
Alignment:
| Q |
1 |
tgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattgga |
98 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | ||||||| ||||||| |||||| ||||| |||| ||||||||||| | ||||||| |
|
|
| T |
35344 |
tgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaa--aagtaaagaagtatgataaagacaacaactcttgggtcatcattgga |
35441 |
T |
|
| Q |
99 |
agatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcattgta |
198 |
Q |
| |
|
|| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || ||||| || |
|
|
| T |
35442 |
agctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttattcatggtg |
35541 |
T |
|
| Q |
199 |
gaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcat |
298 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| ||| | |
|
|
| T |
35542 |
gaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcataattgtac |
35641 |
T |
|
| Q |
299 |
tgtgatgggatgttgatg |
316 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35642 |
tgtgatgggatgttgatg |
35659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 48944 - 49259
Alignment:
| Q |
1 |
tgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattgga |
98 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | ||||||| ||||||| |||||| ||||| |||| ||||||||||| | ||||||| |
|
|
| T |
48944 |
tgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaa--aagtaaagaagtatgataaagacaacaactcttgggtcatcattgga |
49041 |
T |
|
| Q |
99 |
agatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcattgta |
198 |
Q |
| |
|
|| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || ||||| || |
|
|
| T |
49042 |
agctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttattcatggtg |
49141 |
T |
|
| Q |
199 |
gaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcat |
298 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| ||| | |
|
|
| T |
49142 |
gaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcataattgtac |
49241 |
T |
|
| Q |
299 |
tgtgatgggatgttgatg |
316 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
49242 |
tgtgatgggatgttgatg |
49259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 9830 - 9515
Alignment:
| Q |
1 |
tgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattgga |
98 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | ||||||| ||||||| |||||| ||||| |||| ||||||||||| | ||||||| |
|
|
| T |
9830 |
tgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaa--aagtaaagaagtatgataaagacaacaactcttgggtcatcattgga |
9733 |
T |
|
| Q |
99 |
agatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcattgta |
198 |
Q |
| |
|
|| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || ||||| || |
|
|
| T |
9732 |
agctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttattcatggtg |
9633 |
T |
|
| Q |
199 |
gaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcat |
298 |
Q |
| |
|
| ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| ||| | |
|
|
| T |
9632 |
caataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcataattgtac |
9533 |
T |
|
| Q |
299 |
tgtgatgggatgttgatg |
316 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9532 |
tgtgatgggatgttgatg |
9515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 15895 - 15580
Alignment:
| Q |
1 |
tgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattgga |
98 |
Q |
| |
|
||||||| |||||||||||||||||| || ||| ||||| | ||||||| ||||||| |||||| ||||| |||| ||||||||||| | ||||||| |
|
|
| T |
15895 |
tgattgcggttgtaaaaaatgtattggatgctgcagattatggacaacaaa--aagtaaagaagtatgataaagacaacaactcttgggtcatcattgga |
15798 |
T |
|
| Q |
99 |
agatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcattgta |
198 |
Q |
| |
|
|| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || ||||| || |
|
|
| T |
15797 |
agctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttattcatggtg |
15698 |
T |
|
| Q |
199 |
gaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcat |
298 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| ||| | |
|
|
| T |
15697 |
gaataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcataattgtac |
15598 |
T |
|
| Q |
299 |
tgtgatgggatgttgatg |
316 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15597 |
tgtgatgggatgttgatg |
15580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 3635 - 3320
Alignment:
| Q |
1 |
tgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattgga |
98 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | ||||||| ||||||| |||||| ||||| |||| ||||||||||| | ||||||| |
|
|
| T |
3635 |
tgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaa--aagtaaagaagtatgataaagacaacaactcttgggtcatcattgga |
3538 |
T |
|
| Q |
99 |
agatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcattgta |
198 |
Q |
| |
|
|| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || ||||| || |
|
|
| T |
3537 |
agctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttattcatggtg |
3438 |
T |
|
| Q |
199 |
gaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatcaacttgcgagaaagaaaatagggagctttgtgtatagttgcat |
298 |
Q |
| |
|
| ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||| |||| || |||| | |||||| ||| ||| | |
|
|
| T |
3437 |
caataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatcggcttgcaggaaatcaatcagggggttttgtgcataattgtac |
3338 |
T |
|
| Q |
299 |
tgtgatgggatgttgatg |
316 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3337 |
tgtgatgggatgttgatg |
3320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold1330
Description:
Target: scaffold1330; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 1743 - 1997
Alignment:
| Q |
1 |
tgattgcagttgtaaaaaatgtattgtataatgctgattacg--caacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattgga |
98 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | ||||||| ||||||| |||||| ||||| |||| ||||||||||| | ||||||| |
|
|
| T |
1743 |
tgattgcagttgtaaaaaatgtattgtatgctgcagattatggacaacaaa--aagtaaagaagtatgataaagacaacaactcttgggtcatcattgga |
1840 |
T |
|
| Q |
99 |
agatttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtcccattcttcattgta |
198 |
Q |
| |
|
|| ||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| ||| | ||||| |||||||| || ||||| || |
|
|
| T |
1841 |
agctttcccgagcaagctacttcgatgaatggttggggattagcctttcgagcatgcggagatcatctattatttcttggaggtcctgttattcatggtg |
1940 |
T |
|
| Q |
199 |
gaggcatgttggaaatcaatgcttgggtcccaaatgaaagagcgatacaatggaatc |
255 |
Q |
| |
|
| ||| ||||||||||||||||| ||||||||||| ||| | ||||||||||| |
|
|
| T |
1941 |
caataatgatggaaatcaatgcttggatcccaaatgaaggagagccacaatggaatc |
1997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 2941 - 3123
Alignment:
| Q |
1 |
tgattgcagttgtaaaaaatgtattgtataatgctgattacgcaacaaaggaagtaaaaaagtataataaaaacaataactcttgggttaccattggaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | || | | |||||||| |||||| ||||| |||| |||| |||||| | ||||||||| |
|
|
| T |
2941 |
tgattgcagttgtaaaaaatgtattgtatgctgcagattatggaaaacaagaagtaaagaagtatgataaagacaacaactattgggtcatcattggaag |
3040 |
T |
|
| Q |
101 |
atttcctgagcaagccacttcaatgaaaggttggggattagcctttcgtgcatgtggagatatgctaatttttctgggaggtc |
183 |
Q |
| |
|
|||||||||||||| || || |||| ||||||||| |||| ||||| |||||||||||| ||| | ||||| ||||||| |
|
|
| T |
3041 |
ctttcctgagcaagctacatcggtgaatggttggggactagcatttcgatcatgtggagataaactattatttcttggaggtc |
3123 |
T |
|
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