View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18098_low_5 (Length: 315)

Name: NF18098_low_5
Description: NF18098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18098_low_5
NF18098_low_5
[»] chr5 (6 HSPs)
chr5 (8-315)||(38604952-38605259)
chr5 (8-213)||(40180450-40180652)
chr5 (46-196)||(38605684-38605831)
chr5 (45-176)||(40181199-40181330)
chr5 (225-313)||(38605860-38605948)
chr5 (225-305)||(40180712-40180792)
[»] chr6 (3 HSPs)
chr6 (10-178)||(410926-411095)
chr6 (133-188)||(9161361-9161416)
chr6 (268-313)||(410782-410827)
[»] chr8 (7 HSPs)
chr8 (10-313)||(44460157-44460457)
chr8 (10-313)||(44467690-44467990)
chr8 (12-254)||(34502221-34502460)
chr8 (43-196)||(44459572-44459722)
chr8 (43-196)||(44467105-44467255)
chr8 (269-313)||(44459446-44459490)
chr8 (269-313)||(44466979-44467023)
[»] chr1 (1 HSPs)
chr1 (10-313)||(46359027-46359327)


Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 38604952 - 38605259
Alignment:
Q  8 catcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38604952 catcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaag 38605051  T
Q  108 agcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacaca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38605052 agcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacaca 38605151  T
Q  208 tatccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38605152 tatccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcggaatggccaatatgtttaagcaagtcccacagaaaaagtatgt 38605251  T
Q  308 cattctgc 315  Q
    ||||||||    
T  38605252 cattctgc 38605259  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 40180450 - 40180652
Alignment:
Q  8 catcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaag 107  Q
    |||||||||||||||| || ||||| |||||||| ||||||||||| || ||||||||||||||||| | ||||| |||| ||  | | | |  | |||     
T  40180450 catcatcaggaaggagagtatctggttgaagcaccatcttttgacatatggaagcggcttgctggagtacatcagtactgtaatctat-gcc--acaaat 40180546  T
Q  108 agcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacaca 207  Q
    ||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| |  ||||||| ||| |||| |||||| | |    
T  40180547 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaaagacctcaaatttatgaaaaacatcaagtgcagccttccctttgtcccaaata 40180646  T
Q  208 tatcca 213  Q
    ||||||    
T  40180647 tatcca 40180652  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 38605684 - 38605831
Alignment:
Q  46 ttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattaggca 145  Q
    |||||||||||||||| |||||| ||||  ||||||||||| ||  |||| |||   ||||||||||  |||||||||  |||||  |||||||| ||||    
T  38605684 ttttgacagatagaagaggcttggtggatgatatcagcactacacgttgtggtc---aaaagagcttgaagtgtaaagtaatatgtgtcttgatttggca 38605780  T
Q  146 cacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttacctt 196  Q
    |||| ||||||||||||||  ||||||||||||  ||||||| ||| ||||    
T  38605781 cacattgaaagacctcaaacatatgaaaaacttcaagtgcagacttgcctt 38605831  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 40181199 - 40181330
Alignment:
Q  45 cttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattaggc 144  Q
    ||||||| |||||||  | ||||| |||| |||||||||||| || |||||  || | |||||||||| ||||||| ||  ||||| ||||||||| |||    
T  40181199 cttttgatagatagactctgcttggtggatcatatcagcactacaccttgtgctcctcaaaagagcttgcagtgtatagtaatatgtatcttgatttggc 40181298  T
Q  145 acacactgaaagacctcaaatttatgaaaaac 176  Q
    ||||| ||||| || ||||| |||||||||||    
T  40181299 acacattgaaatacgtcaaaattatgaaaaac 40181330  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 313
Target Start/End: Original strand, 38605860 - 38605948
Alignment:
Q  225 gagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgtcattct 313  Q
    ||| |||||||||||  | | ||||||||| || || | | ||||||||||||  |||||||| |||||||||||||||||||||||||    
T  38605860 gaggtgattgagaatgggtgggttaagaaggccggtttgataatggccaatattcttaagcaaatcccacagaaaaagtatgtcattct 38605948  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 40180712 - 40180792
Alignment:
Q  225 gagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtat 305  Q
    |||||||||||||||| | |||||||||| ||| |||| | | ||||||||||| || ||||||| ||||||| |||||||    
T  40180712 gagttgattgagaatccgagtgttaagaataccggtctgatagtggccaatatgcttcagcaagttccacagataaagtat 40180792  T

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Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 411095 - 410926
Alignment:
Q  10 tcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatca-gcactgcaacttgttgtcttaaaaaga 108  Q
    ||||| |||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||| | | |||||||||||||||  ||||||||    
T  411095 tcatcgggaaggagggtttctggatgaagcagcatcttttgacagatagaagccgcttgctggagcatataaagtactgcaacttgttgttctaaaaaga 410996  T
Q  109 gcttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaactt 178  Q
    ||||||| ||||||||| |||| ||||||||| || ||||| ||||| ||||||||||||||||||||||    
T  410995 gcttccaatgtaaagatgtatgtatcttgatttggaacacattgaaatacctcaaatttatgaaaaactt 410926  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 9161416 - 9161361
Alignment:
Q  133 tcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagt 188  Q
    |||||||| || ||||| |||||||||||||||| |||||||||||  ||||||||    
T  9161416 tcttgattcggaacacattgaaagacctcaaattaatgaaaaacttcaagtgcagt 9161361  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 410827 - 410782
Alignment:
Q  268 tggccaatatgtttaagcaagtcccacagaaaaagtatgtcattct 313  Q
    ||||||||||| ||||||||||| |||| ||||| |||||||||||    
T  410827 tggccaatatgcttaagcaagtctcacataaaaattatgtcattct 410782  T

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Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 44460457 - 44460157
Alignment:
Q  10 tcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagag 109  Q
    ||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||| |||| ||||||||   | ||  |||| |||   |||| ||    
T  44460457 tcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtc---aaaaaag 44460361  T
Q  110 cttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacata 209  Q
    ||| ||| |||  |||||||| ||||||||| ||||| || |||||  ||||||||||||||||||||| |||| | ||||| ||||||  | |||   |    
T  44460360 cttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaa 44460261  T
Q  210 tccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgtca 309  Q
    |||||| || | |||||||||||||||||||  |||| |||||||  |||||| | | ||||||||||| |||||||| ||||||||||||| ||||||     
T  44460260 tccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcg 44460161  T
Q  310 ttct 313  Q
    ||||    
T  44460160 ttct 44460157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 44467990 - 44467690
Alignment:
Q  10 tcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagag 109  Q
    ||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||| |||| ||||||||   | ||  |||| |||   |||| ||    
T  44467990 tcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtc---aaaaaag 44467894  T
Q  110 cttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacata 209  Q
    ||| ||| |||  |||||||| ||||||||| ||||| || |||||  ||||||||||||||||||||| |||| | ||||| ||||||  | |||   |    
T  44467893 cttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaa 44467794  T
Q  210 tccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgtca 309  Q
    |||||| || | |||||||||||||||||||  |||| |||||||  |||||| | | ||||||||||| |||||||| ||||||||||||| ||||||     
T  44467793 tccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcg 44467694  T
Q  310 ttct 313  Q
    ||||    
T  44467693 ttct 44467690  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 34502221 - 34502460
Alignment:
Q  12 atcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagct 111  Q
    ||||||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||  ||||||||   | || |||||  ||   |||||||||    
T  34502221 atcaggaaggacggtttctggatgaagcagcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatcttgtgatc---aaaagagct 34502317  T
Q  112 tccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacatatc 211  Q
    | |||||||||| | |||| |||| |||| |||||||| |||||  ||||||||||||||||||||| | ||||| |||| ||||||||| ||| | ||     
T  34502318 ttcagtgtaaaggtgtatgtatctcgattcggcacacattgaaatgcctcaaatttatgaaaaacttcgggtgcaatctttccttggtccaacataaatg 34502417  T
Q  212 caaatgaatctaggagttgattgagaatctgggtgttaagaag 254  Q
    |||  |||| ||||||||||| ||||||| | |||||||||||    
T  34502418 caagggaatgtaggagttgatagagaatccgtgtgttaagaag 34502460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 44459722 - 44459572
Alignment:
Q  43 atcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattag 142  Q
    ||||| |||||||||||||| ||||| |||| ||||| || ||| ||  | || |||   |||||||||| ||| ||||||  ||||| ||| ||||| |    
T  44459722 atcttctgacagatagaagctgcttgatggatcatatgagtactacaggtcgtggtc---aaaagagcttgcagagtaaagtaatatgtatcgtgatttg 44459626  T
Q  143 gcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttacctt 196  Q
    |||||||||||||| |||||||  ||||||||||||  |||||||  |||||||    
T  44459625 gcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcagatttacctt 44459572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 44467255 - 44467105
Alignment:
Q  43 atcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattag 142  Q
    ||||| |||||||||||||| ||||| |||| ||||| || ||| ||  | || |||   |||||||||| ||| ||||||  ||||| ||| ||||| |    
T  44467255 atcttctgacagatagaagctgcttgatggatcatatgagtactacaggtcgtggtc---aaaagagcttgcagagtaaagtaatatgtatcgtgatttg 44467159  T
Q  143 gcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttacctt 196  Q
    |||||||||||||| |||||||  ||||||||||||  |||||||  |||||||    
T  44467158 gcacacactgaaaggcctcaaacatatgaaaaacttcaagtgcagatttacctt 44467105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 44459490 - 44459446
Alignment:
Q  269 ggccaatatgtttaagcaagtcccacagaaaaagtatgtcattct 313  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||    
T  44459490 ggccaatacgcttaagcaagtcccacagaaaaagtatgtcgttct 44459446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 44467023 - 44466979
Alignment:
Q  269 ggccaatatgtttaagcaagtcccacagaaaaagtatgtcattct 313  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||    
T  44467023 ggccaatacgcttaagcaagtcccacagaaaaagtatgtcgttct 44466979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 46359327 - 46359027
Alignment:
Q  10 tcatcaggaaggagggtttctggatgaagcacaatcttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagag 109  Q
    ||||||||||||| |||||||||||||||||  ||||||||||| |||||||||||||| |||| ||||||||   | ||  |||| |||   |||| ||    
T  46359327 tcatcaggaaggatggtttctggatgaagcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtc---aaaaaag 46359231  T
Q  110 cttccagtgtaaagatatatgaatcttgattaggcacacactgaaagacctcaaatttatgaaaaacttggagtgcagtcttaccttggtcccacacata 209  Q
    ||| ||| |||  |||||||| ||||||||| ||||| || |||||  ||||||||||||||||||||| |||| | ||||| ||||||  | |||   |    
T  46359230 cttgcagcgtatggatatatgtatcttgattcggcacgcattgaaatgcctcaaatttatgaaaaacttcgagtccggtctttccttggcacaacatcaa 46359131  T
Q  210 tccaaatgaatctaggagttgattgagaatctgggtgttaagaagaccagtctcagaatggccaatatgtttaagcaagtcccacagaaaaagtatgtca 309  Q
    |||||| || | |||||||||||||||||||  |||| |||||||  |||||| | | ||||||||||| |||||||| ||||||||||||| ||||||     
T  46359130 tccaaaggagtgtaggagttgattgagaatcctggtgctaagaaggtcagtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcg 46359031  T
Q  310 ttct 313  Q
    ||||    
T  46359030 ttct 46359027  T

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