View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18099_low_1 (Length: 780)
Name: NF18099_low_1
Description: NF18099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18099_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 695; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 1 - 764
Target Start/End: Original strand, 31662834 - 31663589
Alignment:
| Q |
1 |
ttgaagaaattatatgctttgagacccttaatcttatccacaacagcactatttctgatgatcaaaatgccattgagtttgtttgttgaagctcaaccaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
31662834 |
ttgaagaaattatatgctttgagacccttaatcttatccacgacagcactatttctgatgatcaaaataccattgagtttgttagttgaagctcaaccaa |
31662933 |
T |
|
| Q |
101 |
tccaaccgcaagtagaagtgctaacttcaaaatgttggacatcgttggccatttttctacataaccaaagattatactaaaaatatgtcaaaatcgacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31662934 |
tccaaccgcaagtagaagtgctaacttcaaaatgttggacatcattggccatttttctacataaccaaagattatactaaaaatatgtcaaaatcgacaa |
31663033 |
T |
|
| Q |
201 |
gatatactaaagcaaagcagcaccctttactggaagatcaaagaaatgaatcgggggtagattccatgtttcttaatcaactgtacaatgtatattacat |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663034 |
gatatactaaagcaaagcagcacccattactggaagatcaaagaaatgaatcgggggtagattccatgtttcttaatcaactgtacaatgtatattacat |
31663133 |
T |
|
| Q |
301 |
ttttcaaccaattctcttcaatgctaaaattccattgcattaactgtgtcattagacacggcagccgtcctagaagtatgctcctaaaatcttctttctt |
400 |
Q |
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|||||||||||||||||| | ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663134 |
ttttcaaccaattctctttagtgctaaaattctactgcattaactgtgtcattagacacggcagccgtcctagaagtatgctcctaaaatcttctttctt |
31663233 |
T |
|
| Q |
401 |
catacacgtaattaacagaaactgcgattcaaattaaccatgcaatcctaagttaaagttagcgaaaaaccgaactgccgaactgctcaaattatttaag |
500 |
Q |
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| T |
31663234 |
catacatgtaattaacagaaactgcgattcaaattaaccatgcaatcctaagttaaagttagcgaaaaa--------ccgaactgctcaaattatttaag |
31663325 |
T |
|
| Q |
501 |
tccaaagtcatcagaacaaacaagaatacttagatttttaaaatttgaacaaaaacttatatatgcaatccttggtcgattataataatagcaataataa |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663326 |
tccaaagtcatcagaacaaacaagaatacttagatttttaaaatttgaacaaaaacttatatatgcaatccttggtcgattataataatagcaataataa |
31663425 |
T |
|
| Q |
601 |
gataagtattatatggaagaggtagagacctgttgcattcttgcagagatatattcatagtgttcattcagttatgcttgtaggagataagttacttttt |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663426 |
gataagtattatatggaagaggtagagacctgttgcattcttgcagagatatattcatagtgttcattcagttatgcttgtaggagataagttacttttt |
31663525 |
T |
|
| Q |
701 |
gtccatcataaatcttctgagtaatctacattcatcaaggtaatacaaaattacaacaagaaat |
764 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663526 |
gtccatcataaatcttctgagtaatctacattcatcaaggtaatacaaaattacaacaagaaat |
31663589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 22559330 - 22559249
Alignment:
| Q |
1 |
ttgaagaaattatatgctttgagacccttaatcttatccacaacagcactatttctgatgatcaaaatgccattgagtttgt |
82 |
Q |
| |
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|||||| | |||||||||||||||| ||||||| |||||||| | || | ||||||||||| || ||| ||||||||||| |
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| T |
22559330 |
ttgaaggagttatatgctttgagacacttaatcccatccacaagaacagtgtttctgatgatgaagatgatattgagtttgt |
22559249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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