View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18099_low_3 (Length: 468)
Name: NF18099_low_3
Description: NF18099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18099_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 456
Target Start/End: Complemental strand, 47922123 - 47921701
Alignment:
| Q |
16 |
ataaatgacattaatatagtcctttttccgcgcaaacattttgtataaatatttgtgctatttatgttgaatgtcaacaagtcaattgaaggagaaaaga |
115 |
Q |
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| T |
47922123 |
ataaatgacattaatacagtcctttttccgcgcaaacattttgtataaatatttgtgctatttatgttgaatgtcaacaagtcaattgaaggagaaaaga |
47922024 |
T |
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| Q |
116 |
agagatcaagatatcaacaagttggaatggggaaatacaaggttccaatattgttgctttgtgtgttctttaacttgtgcaccatactggaattgaaagt |
215 |
Q |
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| T |
47922023 |
agagatcaagatatcaacaagttggaatggggaaatacaaggttccaatattgttgctttgtgtgttctttaacttg--caccata-------------- |
47921940 |
T |
|
| Q |
216 |
tgatgcaagaacatattcacctttagaaagagaaatcgaagccaaattgaagctcttaaacaagcctgcagtgaaatccatcagggtatgcaatttcata |
315 |
Q |
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| T |
47921939 |
--atgcaagaacatattcacctttagaaagagaaatcgaagccaaattgaagctcttaaacaagcctgcagtgaaatcaatcagggtatgcaatttcata |
47921842 |
T |
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| Q |
316 |
actcctccatcccaattataattacttaagtattttatatcagtgtttgatacaaaatttgaggttatttattgcagagtcaagatggagatattattga |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
47921841 |
actcctccatcccaattataattacttaagtattttatatcagtgtttgatacaaaatttgtgattatttattgcagagtcaagatggagatattattga |
47921742 |
T |
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| Q |
416 |
ctgcgtcaacatctacgaacaaccggcttttgatcatcctg |
456 |
Q |
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| T |
47921741 |
ctgcgtcaacatctacgaacaaccggcttttgatcatcctg |
47921701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 25 - 320
Target Start/End: Complemental strand, 47913977 - 47913693
Alignment:
| Q |
25 |
attaatatagtcctttttccgcgcaaacattttgtataaatatttgtgctatttatgttgaatgtcaacaagtcaattgaaggagaaaagaagagatcaa |
124 |
Q |
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| T |
47913977 |
attaatatagtcatttttctgcacgatcatcttgtataaatatttgtgctatttacgttgaatgtcagcaagtcaa-----------aagaagagatcaa |
47913889 |
T |
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| Q |
125 |
gatatcaacaagttggaatggggaaatacaaggttccaatattgttgctttgtgtgttctttaacttgtgcaccatactggaattgaaagttgatgcaag |
224 |
Q |
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| T |
47913888 |
gatatcaacaagttggaatggggaaatacaaggttccaatattgttgctttgtgtgttctttaacttgtgcaccatactagaattgaaagttgatgcaag |
47913789 |
T |
|
| Q |
225 |
aacatattcacctttagaaagagaaatcgaagccaaattgaagctcttaaacaagcctgcagtgaaatccatcagggtatgcaatttcataactcc |
320 |
Q |
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| T |
47913788 |
aacatattcacctttagaaagagaaatcgaagccaaattgaagctcttaaacaagcctgcagtgaaatccatcagggtatgcaattccataactcc |
47913693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 141 - 336
Target Start/End: Complemental strand, 47931447 - 47931255
Alignment:
| Q |
141 |
aatggggaaatacaaggttccaatattgttgctttgtgtgttctttaacttgtgcaccatactggaattgaaagttgatgcaagaacatattcaccttta |
240 |
Q |
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|||||||| |||||||| | ||| ||||||||||| ||||||||| ||||| || ||| ||||| |||||||| |||| | ||| ||||||||| |
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| T |
47931447 |
aatggggagatacaaggctggaatgttgttgctttgggtgttctttgctttgtgtac---actagaattcaaagttgaagcaaaagcatcctcaccttta |
47931351 |
T |
|
| Q |
241 |
gaaagagaaatcgaagccaaattgaagctcttaaacaagcctgcagtgaaatccatcagggtatgcaatttcataactcctccatcccaattataa |
336 |
Q |
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| T |
47931350 |
gaaagagaaatagaagccaaattgaagctcttaaacaagcctgcagtgaaatccatcagggtatgcaatttcataaatcccccatcctaaatataa |
47931255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 133 - 315
Target Start/End: Complemental strand, 47942699 - 47942517
Alignment:
| Q |
133 |
caagttggaatggggaaatacaaggttccaatattgttgctttgtgtgttctttaacttgtgca---ccatactggaattgaaagttgatgcaagaacat |
229 |
Q |
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|||| |||||||||||||| ||||||| | |||||||||||||| |||||||| |||||| | |||| || | || ||||||||| |||| | ||| |
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| T |
47942699 |
caaggtggaatggggaaatgcaaggttgccatattgttgctttggatgttctttggcttgtgtaataccattctagtatcgaaagttgaagcaacatcat |
47942600 |
T |
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| Q |
230 |
attcacctttagaaagagaaatcgaagccaaattgaagctcttaaacaagcctgcagtgaaatccatcagggtatgcaatttcata |
315 |
Q |
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| T |
47942599 |
---catctttagaaagagaaattgaagccaaattgaaacttctaaacaagcctgcagtgaaatccatcaaggtatgcaattccata |
47942517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 133 - 305
Target Start/End: Complemental strand, 47949373 - 47949195
Alignment:
| Q |
133 |
caagttggaatggggaaatacaaggttccaatattgttgctttgtgtgttctttaacttgtg---caccatactggaattgaaagttgatgcaag---aa |
226 |
Q |
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|||| |||||||||||||| ||||||| |||||||||||||||| ||||||||| |||||| ||||| || |||||||||||||| ||||| | |
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| T |
47949373 |
caaggtggaatggggaaatgcaaggttgcaatattgttgctttgggtgttctttgccttgtgtactaccattctagaattgaaagttgaagcaagagcag |
47949274 |
T |
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| Q |
227 |
catattcacctttagaaagagaaatcgaagccaaattgaagctcttaaacaagcctgcagtgaaatccatcagggtatg |
305 |
Q |
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||| ||| |||||||| |||||||||||||||||| ||||| ||||||||||||| ||||| || |||| |||||| |
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| T |
47949273 |
catcatcatttttagaaaaagaaatcgaagccaaattaaagcttctaaacaagcctgccgtgaagtctatcaaggtatg |
47949195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 456
Target Start/End: Complemental strand, 47948894 - 47948828
Alignment:
| Q |
390 |
cagagtcaagatggagatattattgactgcgtcaacatctacgaacaaccggcttttgatcatcctg |
456 |
Q |
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| T |
47948894 |
cagagtgaagatggagatattattgactgcatcaacatatacaaacaacccgcttttgaccatcctg |
47948828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 47931530 - 47931469
Alignment:
| Q |
28 |
aatatagtcc-tttttccgcgcaaacattttgtataaatatttgtgctatttatgttgaatgt |
89 |
Q |
| |
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| T |
47931530 |
aatatagtccctttttccgcgcaaacatcttatataa-tatttgtgctatttatcttgaatgt |
47931469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 456
Target Start/End: Original strand, 3858883 - 3858951
Alignment:
| Q |
388 |
tgcagagtcaagatggagatattattgactgcgtcaacatctacgaacaaccggcttttgatcatcctg |
456 |
Q |
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| T |
3858883 |
tgcagagtgaaaatggagatattattgattgcgtcgacatttataaacaacctgcttttgaccatcctg |
3858951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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