View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18099_low_5 (Length: 384)
Name: NF18099_low_5
Description: NF18099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18099_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 23 - 364
Target Start/End: Complemental strand, 44952367 - 44952015
Alignment:
| Q |
23 |
gacatgtcaatcacaaacatacatctaaaatatgaatctgttttgaatattctacttagtttgcaattacttgacatcatcttccaattttaaaatggat |
122 |
Q |
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| T |
44952367 |
gacatgtcagtgacaaatatacatctaaaatatgaatctgttttgaatattctagttagtttgcaattacttgacatcatcttccaattttaaaatggat |
44952268 |
T |
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| Q |
123 |
tttgcta---------------ttggcatgtttgaatgtagtcagaggcagtaatatatagttgtaaattagatttgcacaagaggaacttacgatgacg |
207 |
Q |
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| T |
44952267 |
tttgctaatacttacgtgagcattggcatgtttgaatgtagtcagaggcagtaatatatagttgtaaattagctttgcacaagaggaacttacgatgacg |
44952168 |
T |
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| Q |
208 |
tgggtcatatctcttattcccgtgttcttatccgtacgtagaccgtggttgccacactcttaacaattatggtaaagcttatatcatgcatttgtgagga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44952167 |
tgggtcatatctcttattcccgtgttcttatccgtacgtagaccgtggttgccacactcttaacaaatatggtaaagcttatatcatgcatttgtgagga |
44952068 |
T |
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| Q |
308 |
gtccacacgcatttcccagttttgtagtatcttaattgattgaccaatcaccatgat |
364 |
Q |
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| T |
44952067 |
gtccacacgcatttcccagttttgtagtatc----ttgattgaccaatcaccatgat |
44952015 |
T |
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