View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18099_low_7 (Length: 339)
Name: NF18099_low_7
Description: NF18099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18099_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 325
Target Start/End: Original strand, 3291183 - 3291500
Alignment:
| Q |
12 |
atgaaggtgtagagttagtataaagagaagtttgataagt---ggttgctattttaaagtaaggaatccatgttatttaaaaggtaaagagcaaga---t |
105 |
Q |
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| T |
3291183 |
atgaaggtgtagagttagtataaagagaaggttgataagtaatggttcctattttaaagtaaggaatccatgttatttaaaaggtaaagagcaagaagat |
3291282 |
T |
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| Q |
106 |
ggctaaaagaggatgatgctaatacaatatgctttcatgtttgtgccaagagtaggaagagcttgaatgcggtggtggcactaagaagtggggaaaggtg |
205 |
Q |
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| T |
3291283 |
ggctaaaagagggtgatgctaatacaagatactttcatgtttgtgctaagagtaggaagagcttgaatgcggtggtggcgctaagaagtggggaaaggtg |
3291382 |
T |
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| Q |
206 |
ggtgaagaagtctagtaagttgagtttggaagcgcttcaggaagtcaaatttatcaataattgacgttgtactaaaaagactaacaatatcatattcaaa |
305 |
Q |
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|||| ||||| |||||||||| |||||| ||| || ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3291383 |
ggtggagaagcctagtaagttaagtttgaaagtgcatca-gaagtcaaatttatcaataattgacgttgtactaaatagactaacaatatcatattcaaa |
3291481 |
T |
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| Q |
306 |
ataaactattatgctatttg |
325 |
Q |
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|||||||| ||||||||||| |
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| T |
3291482 |
ataaacta-tatgctatttg |
3291500 |
T |
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