View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18099_low_9 (Length: 225)
Name: NF18099_low_9
Description: NF18099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18099_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 48724589 - 48724410
Alignment:
| Q |
23 |
cctgtggtgaaaccaaaatcagcgtacaaaacaagtgaaagattttcactttgactcgaagataaataaagaccttgtgcatttccaatcactttagaac |
122 |
Q |
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| T |
48724589 |
cctgtggtgaaaccaaaatcagcgtacaaaacaagtgaaagattttcactttgactcgaagataaataaagaccttgtgcatttccaatcactttagaac |
48724490 |
T |
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| Q |
123 |
ttttatttggtccctctcttaaaggatcatcaattgcatacacatggccaaatggtgttgctgattttggtccaacggtg |
202 |
Q |
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| T |
48724489 |
ttttatttggtccctctcttaaaggatcatcaattgcatacacatggccaaatggtgttgctgattttggtccaacggtg |
48724410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 48727444 - 48727283
Alignment:
| Q |
23 |
cctgtggtgaaaccaaaatcagcgtacaaaacaagtgaaagattttcactttgactcgaagataaataaagaccttgtgcatttccaatcactttagaac |
122 |
Q |
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||||| ||||||||||||||||| |||| ||||| | | ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |||| |
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| T |
48727444 |
cctgttgtgaaaccaaaatcagcatacataacaatcgttaaattttcactttgacttgaagacaaataaagaccttgtgcatttccaatcaattttgaac |
48727345 |
T |
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| Q |
123 |
ttttatttggtccctctcttaaaggatcatcaattgcatacacatggccaaatggtgttgct |
184 |
Q |
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| T |
48727344 |
tttcatttggaccctctcttaagggatcatcgattgcatacacatggccaaatggggttgct |
48727283 |
T |
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